Thiocapsa sp. M50B4: KFB96_13420
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Entry
KFB96_13420 CDS
T07253
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFB96_13420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thim03019
]
KFB96_13420
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFB96_13420
Messenger RNA biogenesis [BR:
thim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFB96_13420
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVL46765
LinkDB
All DBs
Position
complement(2959525..2960811)
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AA seq
428 aa
AA seq
DB search
MSFDSLGLQADLLRAVATQRYARPTPIQLQAIPEILAGHDLLAGAQTGTGKTAAFVLPLL
QRLSEKGHPQRHPRALILTPTRELAAQVGERVHAYGLHLPLRSAIVFGGVGMQPQINQLQ
RGVDVLVATPGRLLDHAGRRTVDLSRVEILVLDEADRMLDMGFIHDIRRIIQLLPERRQN
LLFSATYSDDIRRLADGLLKRPKLIEVARRNMAAESVTQAAHPVDKARKRDLLAHLFRSE
GWHQVLVFTRTKAGANRLVEHLGREGITAAAIHGNKSQSARTRALDDFKRGSVRALVATD
IAARGLDIVDLPQVVNFELPNVAEDYVHRIGRTGRAGAGGKALSLVSHDEQGLLQGIQRL
LRKEISMNPVVGFEPSLVPPECEPDRSLGGRRDSRGPSRPARKPAAAASPAAKRPWRGGD
RRGRAVTP
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgattcactcggccttcaggccgacttgctgcgtgccgtggcaacgcagcgt
tatgcccgtccgaccccgattcaactgcaggcaataccggagatcttagccggtcacgac
ctgcttgccggggctcaaaccggaacaggcaagacggcggccttcgtgctgccgctcttg
cagcgactctccgaaaaaggtcacccgcaacgtcatccgcgtgcactgatcttgacgccg
acgcgcgagctggcggcccaggtcggcgagcgtgtgcatgcctacggcctgcacctgcct
ttgcgctcggcgatcgtcttcggcggtgtcggtatgcagcctcagatcaatcagctgcag
cggggcgtcgacgttctggtcgcaactccgggacgcctgctcgatcatgcaggccgacgc
accgtcgatctgtctcgcgtggagatcctcgtcttggacgaggccgatcgcatgctggat
atgggcttcatccacgacattcggcgcatcattcagctgctccccgagcggcgtcagaat
ctgctgttttcggcgacctactccgacgacatcaggcgtttggccgacggactgctcaag
cggccgaagctgatcgaggtcgcacgccgcaacatggccgccgaatcggtcacgcaggcg
gcacatccggtcgacaaggcccgcaagcgcgatttgctcgcgcacctcttccgcagcgag
ggttggcatcaggtgctggtgttcacgcggaccaaggccggcgccaaccggctggtcgag
cacctgggcagagagggcatcacggccgcagccatccacggcaacaagagccaatcggcc
cgaacgcgcgccttggatgatttcaagcgcgggagcgtccgggcattggtggcgacggat
atcgccgcgcggggattggatatcgtcgatctgccccaagtggtgaatttcgagctgccg
aacgtcgccgaggattatgtgcaccgtatcgggcggaccggtcgagcaggtgccggcggc
aaggccctatccttggtcagtcatgacgagcaaggtttgctgcaggggattcagcggctc
ctgcgcaaagagatttcgatgaatcccgtggtcggtttcgagccgtcgctggttccgccc
gagtgcgagccggatcgaagcctcggcggacgccgtgattcgcgtggaccgagccgaccg
gcacgcaagccggcggcggccgcttcgccggcggcgaagcggccatggcgtgggggagac
cggcgtgggcgcgccgtgacgccctaa
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