Thiocapsa sp. M50B4: KFB96_15395
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Entry
KFB96_15395 CDS
T07253
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFB96_15395 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thim03021
]
KFB96_15395 (rho)
03019 Messenger RNA biogenesis [BR:
thim03019
]
KFB96_15395 (rho)
Transcription machinery [BR:
thim03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KFB96_15395 (rho)
Messenger RNA biogenesis [BR:
thim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KFB96_15395 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
QVL47110
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All DBs
Position
3404873..3406129
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AA seq
418 aa
AA seq
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MNLTELKKAPVPELVALAQSMEIEGVGRSRKQDLIFAILKAQAKRGEDISGDGVLEILTD
GFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDIN
FDRPENAKSKILFENFTPLFANKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPP
KAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMEIHMDRRIAERRIFPSINI
NRSGTRREELLMNPAELQKMWILRKILHPMDELAAMEFLHDKLKATKTNDEFFSSMKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaacctaaccgaattgaagaaagcgcccgtacccgagctggtcgcactggcccagtcg
atggagatcgaaggcgtcgggcggtcgcgcaaacaagacctgatcttcgccatcctcaag
gcgcaggccaaacgcggcgaggacatctccggcgacggggtgctcgagatcctcaccgac
ggcttcggattcctgagatccgcggacgcctcctatctcgccgggccggacgacatctat
gtctcccccagccagatccgccgcttcgcgctgcgcaccggcgacaccatctccggcaag
attcgcccacccaaggacggcgagcgctatttcgcgctgctcaaggtcaacgacatcaac
ttcgaccggccggaaaacgccaagtcgaagatcctgttcgagaacttcacgccgctgttc
gccaacaagcggctcaccctcgagatcggcaacggcagcaccgaggacatcacggcacgg
accatcgatctggtggcccccatcggcaagggtcagcgcggactcatcgtctcgccgccc
aaggccggcaagaccatgatgttgcagaacatcgcccaatcgatcggacacaatcatccg
gattgctacctgatcgtgctgctgatcgacgagcgcccggaagaggtcaccgagatggcc
cgctcggtgcgcggcgaggtcatctcctcgaccttcgacgagcccgcgacgcgtcacgtc
caggtcgccgagatggtcatcgagaaggccaagcgtctggtcgagcacaagcgcgacgtg
gtcatcctgctcgactccatcacccgactcgcgcgcgcctacaacacggtcgtgccctcc
tccggcaaggttctcacgggtggtgtggacgccaacgcactgcagcgccccaagcgcttc
ttcggtgcggcgcgcaacgtcgaggaaggcggcagcttgaccattctggccaccgcgctc
gtggacaccggctcgcgcatggacgacgtcatctacgaggagttcaaggggaccggcaac
atggagatccacatggatcgccgcatcgccgagcgccgcatcttcccctccatcaacatc
aaccgctcgggcacgcgccgtgaagagctgctgatgaaccccgccgaattgcagaagatg
tggatcctgcgcaagatcctgcacccgatggacgagctcgccgcgatggaattcctgcac
gacaagctcaaggcgaccaagaccaacgacgagttcttctcctccatgaagggttaa
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