Thiocapsa sp. M50B4: KFB96_19260
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Entry
KFB96_19260 CDS
T07253
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFB96_19260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thim03019
]
KFB96_19260
03009 Ribosome biogenesis [BR:
thim03009
]
KFB96_19260
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFB96_19260
Messenger RNA biogenesis [BR:
thim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFB96_19260
Ribosome biogenesis [BR:
thim03009
]
Prokaryotic type
rRNA helicases
KFB96_19260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
GTP_cyclohydro2
Motif
Other DBs
NCBI-ProteinID:
QVL47793
LinkDB
All DBs
Position
complement(4212168..4214039)
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AA seq
623 aa
AA seq
DB search
MDTPDTSIGFGQLGLAPAIAQAVEDLGYETPTPVQIQCIPHLLAGRDLLGQAQTGTGKTA
AFALPLLSRVDPTQRGPQVLVLTPTRELALQVAEAFQGYAQHLKGFLVLPIYGGQAYGLQ
LSQLKRNPQVIVGTPGRVMDHLKRGTLALDMLKTFVLDEADEMLNMGFAEDIDWIFEQTP
PGRQVALFSATMPAGIRRVAQTRLSDPVEIRVASNSETVDTIDQHHCVVTRFHKLDVLTR
ILELEPFDGMLVFVRTKHATVELADKLKAHGFAAEPLNGDMSQEMRERTVERLKQGQLDI
LVATDVAARGLDVERLSHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLR
AIERTIRRTVPAMEPPSASQLSESRIDRFTAELRKTLTEQDLDFFYRLVARLSTEQELEM
MDIAAALAYLTQRERPLDVKADLPRPAATRPERPERTSESEGRDAGRPRAPRDGERGAAP
RREGAREDSRDRPRPQGRGSEGLTSYRIEVGHQHGATPREIVGAIANESGLEGRYIGRID
IRDDHSMVDLPEGMPREIFNHLKRVYVRGQALRISLADGSAGGTRRSGGENPGGARPDQP
TYERKPREAGFHQERKRKRPDPS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggacacccccgacacgagtatcggcttcggccagctcggcctagcccccgcaatcgct
caagccgtcgaagatctcggttacgagacaccgacacctgttcaaatccaatgtatcccg
cacctgctcgccggacgcgacctgctcggccaggcccagaccggcaccggcaagacagcg
gcctttgccctgcccttgctcagccgcgtcgatcccacgcagcgcggaccccaggtcttg
gtcctcacgccgacccgcgagctcgcgctccaggtcgccgaagccttccaaggctacgcc
cagcacctgaagggctttctcgtgctgccgatctacggcggtcaggcctacggcctgcag
ctcagccagctcaaacgcaacccgcaggtgatcgtcggcacgcccgggcgcgtcatggac
catctcaagcgcggcacgctcgcgctcgacatgctcaagacgttcgtcctggacgaggcc
gacgagatgctcaacatgggcttcgccgaagatatcgactggatcttcgagcagaccccg
cccggacgccaggtcgcgctcttctccgcgaccatgcccgcggggatacgccgggtcgct
cagacccgactgtccgatccggtcgagatccgcgtcgcgtcgaactccgagacggtcgac
accatcgaccagcaccactgcgtcgttacccgtttccacaagctggacgtgctcacccgc
atcctggagctcgagccgttcgacggtatgctcgtcttcgtccgcaccaaacatgcgacc
gtcgagctcgccgataagctcaaggcgcatggtttcgccgccgagcccttgaacggcgat
atgagccaggagatgcgcgagcgcaccgtcgagcggctcaagcagggccaactcgatatt
ctggtcgcgaccgatgtggccgcgcgcgggctcgacgtggagcggctcagccatgtcgtg
aactacgatatcccgaccgatccctccgcctatgtccaccggatcgggcggaccgggcgt
gccggccgggccggccgcgccatcctgctggtggagccgcgcgagcgcgggctgctgcgc
gcgatcgagcgcaccatccggcgcaccgtgccggcgatggagccgccctcggcctcgcag
ctcagcgagtcgcgcatcgaccgcttcaccgccgagctgcgcaagaccctgaccgagcag
gatctcgacttcttctaccgcctggtcgcacgactgagcacggagcaggagctggagatg
atggacatcgccgcggcgctggcctatctcactcagcgcgagcgtccgctcgatgtcaaa
gcggatctgccgcgccccgcggcaacccggcccgagcgtccggaacgcacgtcagagagc
gaaggtcgcgacgcgggacggccgcgcgcgccccgtgacggcgagcgtggcgcagcgccc
cggcgcgaaggggctcgcgaagacagtcgcgaccgcccgcgtccgcaggggcgcggatcc
gaggggctcaccagctatcggatcgaggtcggccaccagcacggcgccaccccgcgcgag
atcgtcggcgccatcgccaacgagtccggtctggaaggtcgttatatcggccggatcgac
atccgggacgatcactcgatggtcgatctgccggagggcatgccgcgcgagatcttcaac
catctcaaacgggtgtatgtccgcggacaggcattgcggatctcgctcgcggatggctcg
gccggcggaacgcggcgcagcgggggagaaaaccccggcggcgctcgccccgatcaaccg
acatacgagcgtaaacctcgggaggccggattccatcaggagcgcaagcgcaagcgtccg
gatccgagctga
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