Thiocapsa sp. M50B4: KFB96_24030
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Entry
KFB96_24030 CDS
T07253
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
thim
Thiocapsa sp. M50B4
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thim03032
]
KFB96_24030 (topA)
03400 DNA repair and recombination proteins [BR:
thim03400
]
KFB96_24030 (topA)
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KFB96_24030 (topA)
DNA replication proteins [BR:
thim03032
]
Prokaryotic type
DNA Topoisomerases
KFB96_24030 (topA)
DNA repair and recombination proteins [BR:
thim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KFB96_24030 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Motif
Other DBs
NCBI-ProteinID:
QVL48605
LinkDB
All DBs
Position
5279268..5281577
Genome browser
AA seq
769 aa
AA seq
DB search
MNLVIVESPAKAKTIEKYLGPDFEVIASYGHVRDLVPKEGAVDTENGFAMKYQIIDRNEK
HVQAIAKKLKGADALYLATDPDREGEAISWHLFELLKSRRQIGKRPVFRVVFNEITKRAV
QEAVANPREISYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER
EDEIEAFVSREYWSIEADAAKEARRFTAKLVEFEGEKVEQFSIVDEGRAATVHRTLEQAS
AGKLKVDEVERKQRKRNPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVDVGGGPT
GLITYMRTDSVNLAQEALDEIRAYVAERYGADHLPEQPRFYKTKAKNAQEAHEAIRPTSA
YQVPKEIRAHLSADQFKLYELIWKRTLACQMAHALINQVAITLSAGEGNLLRATGSTVAE
PGFMSVYLEGRDDAKSADDDEERMLPEMKAGDLVDLLAIRPEQHFTEPPPRYSEASLVKA
LEEYGIGRPSTYASIISTLQDREYVVLETKRFLPTDVGRVVNRFLTEYFTSYVDYDFTAR
LEDDLDAVSRGEGEWIPLLEQFWKPFKERVDHTEASVKRSDVTQERIDETCPKCGGQLSI
RLGRNGRFIGCTNYPECDYTRDLNPDKAEADAPELIEGRICPLCNSALEIKRGRYGKFIG
CSAYPSCKHIEPLEKPEDTGVTCPKCTKGTLQKKKSRKGKIFYSCSTYPKCDYAVWDEPI
AEPCPKCGWAVLTIKTTKTKGASKVCPQKECGFREAIPEDHAEDTAESA
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgtcatcgtcgaatctccggccaaggccaagaccatcgagaagtacctcgga
cccgacttcgaggtgatcgcctcctatggtcatgtccgtgacctggtgcccaaagagggc
gcggtcgataccgagaacggcttcgcgatgaagtaccagatcatcgatcgcaacgagaaa
cacgtccaggcgatcgccaagaagctcaaaggggccgacgcactctatctcgcgaccgac
ccggaccgcgaaggcgaggcgatctcctggcatctcttcgagctgctgaagagccgccgc
cagatcggcaagcgcccggtgttccgggtggtcttcaacgagatcaccaaacgggcggtg
caggaggcggtcgccaacccgcgcgagatctcctacgacctggtcaacgcccagcaggca
cgtcgtgcgctggattatctggtcggcttcaatctctccccgctgctgtggaagaagatt
cggcgcggtctctccgccggacgggtgcagagcccggcgctgcggctgatctgcgagcgc
gaggacgagatcgaggccttcgtcagccgtgaatactggtcgatcgaggcggatgcggcc
aaggaggcgcggcgcttcaccgccaagctggtcgaattcgaaggcgagaaggtcgagcag
ttcagcatcgtcgacgaggggcgtgccgcgaccgttcatcggaccctcgagcaggcgtcc
gccggcaagctgaaggtcgacgaggtcgagcgcaagcagcgcaagcgcaacccggcaccg
cccttcatcacctccacactccagcaggaggccgcgcgcaagctcggcttcacggcccag
cgcaccatgcgcgtcgcccagcagctctacgagggtgtcgatgtcggcggcggtccgacc
ggactcatcacctacatgcgcaccgactcggtgaatctcgcacaggaggcgttggacgag
atccgcgcctatgtcgcggaacgctacggtgcggatcatctgcccgagcagccgcggttc
tacaagaccaaggccaagaacgcccaggaggcccacgaggcgattcgccccacctcggcc
taccaggtccccaaagagatccgcgcccatctcagcgcggatcagttcaagctctacgag
ctgatctggaagcgcaccctggcttgtcagatggcccatgcgcttatcaaccaggtcgcg
atcaccctgagcgccggagagggcaatctcctccgagccaccgggtcgacggtcgccgag
cccggcttcatgagcgtctatctggaagggcgcgacgatgccaagagcgccgacgacgac
gaggagcgcatgctccccgagatgaaggccggagacctggtggacctgcttgccattcgc
cccgagcagcatttcaccgagccgccgccgcgttactccgaggcgtccttggtgaaggcg
ctggaggaatacggcatcggccgtccctcgacctacgcctccatcatctccacacttcaa
gatcgcgaatacgtggtcttggagaccaagcgcttcctgccgaccgacgtcgggcgggtg
gtgaaccggttcctgaccgagtatttcacttcctacgtggactacgacttcaccgcgcgt
ctggaggatgacctggatgcggtctcgcgcggggagggcgagtggatccccttgctcgag
cagttctggaaacccttcaaggagcgcgtcgaccataccgaggcgtcggtcaagcgcagc
gacgtcacccaggagcgcatcgacgagacctgccccaaatgcggcggtcagttgtcgatc
cggctcgggcgcaacgggcgcttcatcggctgcacgaactatcccgagtgcgactacacg
cgcgacctcaaccccgacaaggccgaggcggatgcccccgagttgatcgagggtcgcatc
tgtccgctctgcaactccgcactcgagatcaagcgcggacggtacggcaagttcatcggc
tgcagcgcctacccgagctgcaagcacatcgagccgctggagaagcccgaagataccggc
gtgacctgccccaaatgcaccaaggggacgctgcagaagaagaagtcacgcaagggcaag
atcttctattcctgctcgacctatcccaagtgcgactacgccgtctgggacgagcccatc
gccgagccctgccccaagtgcggctgggcggtcttgacgatcaagaccaccaagaccaaa
ggggcctccaaggtatgtcctcaaaaggaatgcggtttccgggaggcgatcccggaggat
cacgccgaagacacggccgaatcggcgtag
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