Candidatus Thioglobus sp. NP1: CRN91_02860
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Entry
CRN91_02860 CDS
T05818
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thin
Candidatus Thioglobus sp. NP1
Pathway
thin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRN91_02860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thin03019
]
CRN91_02860
03009 Ribosome biogenesis [BR:
thin03009
]
CRN91_02860
Enzymes [BR:
thin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CRN91_02860
Messenger RNA biogenesis [BR:
thin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CRN91_02860
Ribosome biogenesis [BR:
thin03009
]
Prokaryotic type
rRNA helicases
CRN91_02860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
HEM4
Clathrin-link
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AXE61620
UniProt:
A0A344W885
LinkDB
All DBs
Position
complement(552117..553895)
Genome browser
AA seq
592 aa
AA seq
DB search
MSEKELSANFNSFGLSKELLKVLDEVGYESPSAIQEQCIPHLLNGHDVIGQAQTGTGKTA
AFALPLIDRIDISNNQVQLLVLAPTRELAIQVSEAIQTYARHLKGFHVLPIYGGQSYDIQ
LRPLKRGVHAVVGTPGRVMDHLKRGTLKLNSLKALVLDEADEMLRMGFIDDVKWVMEKLP
NERQIALFSATMPDVIRRVAEKFLNTPKIVKVKTKTATAQTISQRYWLVSGVNKLDALTR
ILEVEEFDALLIFVRTKTATADLAEKLSARGFTAEAINGDIAQRQRERIIQQLKNGKIDI
LIATDVAARGLDVERISHVVNYDIPQDPESYVHRIGRTGRAGREGKAILFVAPRERRMLK
TIERITRQPIDPMQLPSAKIINEQRVVNFKNRITDTLNNQELAIFEELILTYQKEHEIDA
FKIASALALMAQGTEPLLLNEKEINQASLDKGNKSKLSVSINADPLKDNPSIQMRRYRIA
VGHKDNIKPGNVLGAIANEAEISSAFIGAIQIYEDFTTVDLPDEMPKETLQILKNTRVFD
KKLNIEELTEKNNSTSHRERTSHFKREPSKRKRTGKPRRNKDRKFSKSRPKR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaaggaattaagcgcaaattttaatagttttggcctttctaaagaattgcta
aaggtactcgatgaggttggctatgaatccccttctgcaattcaagaacagtgcattcct
cacttactgaatggccatgatgtaattggtcaagcgcaaacaggaactggtaaaactgca
gcttttgctcttccattgattgacagaattgatataagtaataatcaagtccaactttta
gttttagcaccaactagggaacttgcgattcaagtttctgaggccattcaaacctatgcc
agacatctcaaaggctttcatgttttgcctatatatggtggacaatcttatgatattcaa
ttaagaccccttaaaaggggcgttcatgcagttgtaggtacacctggtcgagtgatggat
catttaaaaagaggcacacttaagcttaactcactaaaagcactcgtacttgatgaggct
gatgaaatgttgaggatgggatttattgatgatgtcaaatgggtaatggaaaaactgcca
aacgagcgtcaaattgctcttttttctgcaacaatgccagatgtaattagaagggttgca
gaaaaatttttaaatactcctaagatagttaaagttaagacaaaaactgcaacagcgcaa
actattagccaaagatactggcttgtaagtggtgtaaataaattagacgcccttactcga
attttggaggttgaagaatttgatgccttacttatatttgtcagaactaaaactgccact
gcagatcttgcagaaaaattatcagcgcgaggcttcactgctgaagccattaatggtgat
attgctcaaaggcaaagagaacgaattattcagcaacttaaaaatggaaaaattgatatc
cttattgcaacagatgttgcagcaagaggactagatgttgaacgaatatcacatgttgta
aattatgacataccacaagatcctgaatcttatgttcatcgcattggaagaactggaaga
gctggcagagaaggtaaagctatactctttgttgcgcctcgtgaaagaagaatgcttaag
acaattgaaagaattactcgtcaaccaattgatcctatgcaacttccttcagcgaaaatt
attaatgagcaaagggttgttaactttaaaaacagaataacagacactctaaataaccaa
gaacttgctatctttgaagaattaattcttacttaccaaaaagagcatgagatagatgct
tttaaaatagcatcagcattagctctgatggctcaaggaactgaaccattgttgctaaac
gaaaaagaaataaatcaagcttcacttgataaaggtaataaaagtaaattatcagtttcc
ataaacgcagaccccttaaaagataacccatcaattcaaatgcgtcgttataggattgct
gttggtcataaagataatatcaaaccaggaaatgtattaggtgcaatagctaatgaagct
gaaataagtagtgcttttataggtgcaatacaaatttatgaagactttacaactgtagat
ttacctgatgaaatgccaaaagaaactcttcaaatactaaaaaatactagagtctttgat
aaaaaactcaacattgaagagttgactgaaaaaaataactcaacctcacatagagagaga
acaagtcattttaaaagggaaccatccaaaagaaaaaggactggtaagcctcgcagaaat
aaagataggaagttttcaaaaagcaggcctaaaagataa
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