Candidatus Thioglobus sp. NP1: CRN91_04515
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Entry
CRN91_04515 CDS
T05818
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thin
Candidatus Thioglobus sp. NP1
Pathway
thin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRN91_04515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thin03019
]
CRN91_04515
Enzymes [BR:
thin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CRN91_04515
Messenger RNA biogenesis [BR:
thin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CRN91_04515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Utp25_C
P-loop_SecA
CMS1
Cas3-like_C_2
DUF8086
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AXE61930
LinkDB
All DBs
Position
873990..875321
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AA seq
443 aa
AA seq
DB search
MSFTTLGLSPQILDAIKTEGYSEPSPIQEKSIPIVLEGKDLMAAAQTGTGKTAGFTLPIL
ERLSNGKSPSSNHIRTLILTPTRELAAQVHESVKTYGQNLPISSSVVFGGVGIGPQMKKL
RKGIDILVATPGRLLDLHSQNAVHFDELEVLVLDEADRMLDMGFIHDIKRIIKLLPKKRQ
TLMFSATFSEDIRRLAKGLVYQPIEISVTPRNTTVEAIKHWICPVDKSSKTALLIHLINK
GEWQQVLVFSRTKHGANRIAKNLDKKGINSTAIHGNKSQGARTRALSEFKSGKVRVLVAT
DIAARGIDIDQLPHVINFDLPSVPEDYVHRIGRTGRAGREGEAISLVSADESKQLFDIER
LIQKQLERQLEEGFWPKHDVPKSPELQPVKSKRPKKTDNTKTHKKNSIKKNSSDPRPKNN
QRRRDDQKKLNKPKKKFYWGKNK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcacaacgctaggcctatctccacagattcttgatgcaattaagactgagggg
tattctgaaccttctcctatccaggaaaaatctatccctattgttttagagggaaaagac
cttatggcagcagctcaaactggaacaggaaaaacagcaggcttcactttgccaatttta
gaaagactttcaaatggaaagagtccttcatctaatcatatacgtactttaatactaacg
ccaactcgagagcttgcagctcaagttcatgagagtgtcaaaacctatggacagaattta
ccaataagctcttctgttgtttttggaggagttggtatagggcctcaaatgaaaaagctt
cgaaaaggtattgatattttagttgcaacacctggaagattgcttgatcttcattctcaa
aatgctgtgcattttgatgagttagaggttttagtattagatgaagcagaccgaatgcta
gatatgggatttattcatgatattaaaagaattatcaaactactcccaaaaaaacgtcag
acattaatgttttcagcaaccttttctgaagatatacgtcgacttgctaaaggtcttgtt
tatcagcctattgaaatctcagtaactcccagaaatacgacagttgaagctattaaacac
tggatctgtccagttgataaatctagtaaaactgcacttctaatacatttaattaataaa
ggagagtggcagcaagtacttgtatttagtagaaccaaacatggtgcaaatagaatagct
aaaaatctagataaaaaaggtataaattcaactgctatccatggcaacaaaagtcaaggc
gctagaacacgtgcgttatcagaatttaagtctggcaaggttagggttcttgttgctact
gatattgctgctagaggcattgatattgaccaacttcctcacgttataaattttgacttg
ccgagtgttcctgaggactatgtccatagaattggtcgaactgggagagctggaagggaa
ggtgaggcaatttctttggtaagtgctgatgagtctaaacaattgtttgatattgaacgc
cttatccaaaaacaacttgaacgtcagctagaagagggtttttggccaaaacatgatgtg
ccaaaatctcctgaattgcaaccagttaaatctaagcgcccaaaaaaaacagataatact
aaaactcataaaaaaaattctatcaagaaaaattcttctgatcctagacctaaaaataat
cagcgtcgaagagatgatcagaaaaaactaaataaacctaaaaagaaattttattgggga
aaaaataaataa
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