Thiomicrospira sp. S5: AYJ59_00330
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Entry
AYJ59_00330 CDS
T05796
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03030
DNA replication
thio03410
Base excision repair
thio03420
Nucleotide excision repair
thio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYJ59_00330
03410 Base excision repair
AYJ59_00330
03420 Nucleotide excision repair
AYJ59_00330
03440 Homologous recombination
AYJ59_00330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thio03032
]
AYJ59_00330
03400 DNA repair and recombination proteins [BR:
thio03400
]
AYJ59_00330
Enzymes [BR:
thio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AYJ59_00330
DNA replication proteins [BR:
thio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYJ59_00330
DNA repair and recombination proteins [BR:
thio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AYJ59_00330
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYJ59_00330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AZR80869
LinkDB
All DBs
Position
complement(76712..79552)
Genome browser
AA seq
946 aa
AA seq
DB search
MTQILPKFNPDSPFILVDGSSYLFRAFHAMPPLTNSEGHATGAIFGVINMIGKLLEQYQP
ERIAVVFDAKGKNFRHDLYSEYKAHRPPMPDELRIQIEPIHDIIKALGIPLLVIDGVEAD
DVMGTLAHHATQAKMDALLSTGDKDMAQLVNQHITLVNTMTDTLMTPEKVEEKFHVKPDQ
IIDYLALMGDSSDNIPGIPKCGPKTAAKWLAEYGDIDNLIAHADEIKGKIGENLRANLDQ
LKLSRELTTIRIDCDLPIALADIKRHEADMDALETLFARFDLRNWLSRVLKGDLPFSQSS
GRKAHSETVTNGHSQKSAATETDGVTIESESYATILDMAELDQWLKKLESAEVFAIDTET
TSLNAMQAKIVGISFAYAEPAEKADNAKNSQAWRNFAAYVPLTHDYDGAPTQLPYDEVIA
KLKPILENPAIQKIGQNFKYDWHLFQNAGIDVQGIAFDTMLESYCFNSVATRHNMDDLAL
KYLNHSTIHFEDIAGKGKKQKTFNEIDIETAAPYAAEDADITLQLHQTLMPKLQAEPKLE
TVFRDIEMPLVPVLAKMEHTGVLIDRQMLADQSYELGEKLTALEQKAHLIAGSPFNLNSS
KQLQEILFEKLDLPIIKKTPKGQPSTAEPVLVQLAEDGHEMPNLILEYRSLAKLKSTYTD
SLPKQINPNTGRVHTSYQQAVASTGRLSSTEPNLQNIPIRTPEGRRIRQAFIADDGHQLL
AADYSQIELRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNF
GLIYGMSAFGLAKQLNISRGLAQEYINLYFSRYPGVADYMENTKQNAKQTGYVETLMGRR
LYLPDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVKMQAWLNETTLDIKMLMQVHD
ELVFEVAEPDIDSAKSEIKTIMESALTLDVPLIVEIGQGKNWDEAH
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgactcagatcctacccaaattcaaccccgacagccctttcattctggtggacggttct
tcctacctgttccgtgctttccacgccatgccaccgttgaccaacagtgaagggcatgcc
accggggcgattttcggggtcatcaatatgattgggaaactgctggaacagtaccagcct
gagcgtatcgccgtggtgttcgatgccaaaggcaagaacttccgccacgacctctacagc
gaatacaaggcgcaccgcccgccgatgccggacgaactgcgcattcaaatcgagccgatt
cacgacatcatcaaagcgctgggcattccgttactggtcattgacggtgttgaggcggac
gatgtgatgggcaccctggcccaccacgccacccaagccaaaatggacgctttgctttcc
accggcgataaagatatggcgcagttggtcaaccagcacatcacgctggtcaacaccatg
accgacaccttgatgaccccggaaaaagttgaagaaaagttccacgtgaaacccgaccag
attatcgactatctggcgctgatgggcgacagcagtgacaacattcccggcattccgaaa
tgcggcccgaaaaccgctgcgaaatggctggcggaatacggcgacatcgacaatctcatc
gcgcacgccgacgagatcaaaggcaaaatcggcgagaacctacgcgccaacctcgaccaa
ttaaaactttcccgcgaactgaccaccatccgcattgattgcgatttgccgatcgccttg
gccgacatcaaacgccatgaagccgatatggacgctttggaaaccctgttcgcgcgcttt
gacttgcgtaactggttgtcgcgagtgttgaagggcgacctgcctttcagccagagcagt
ggccgtaaagcccattccgaaacggttaccaatggtcattcccaaaaatccgccgccacg
gaaaccgacggcgtgaccatcgaatccgaatcctatgccacgattttggacatggccgaa
ctggaccaatggctgaaaaaactcgaaagcgccgaggtgtttgccatcgacaccgaaacc
acctcgctcaacgcgatgcaggccaaaatcgtcggcatcagtttcgcttatgcagaaccg
gccgaaaaagccgataacgccaaaaacagccaggcctggcgaaatttcgcggcctatgtg
cctttaacccacgattacgacggtgccccgacacaactgccttacgacgaagtcatcgcc
aaattgaagccgattctggaaaatccggccattcaaaaaatcgggcaaaacttcaaatac
gactggcacctctttcaaaatgccggtatcgacgtgcaaggcatcgctttcgacaccatg
ctggaatcctactgtttcaacagtgtcgccacccgccacaatatggacgatttggcactg
aaatacctgaaccattccaccattcatttcgaagacatcgccggtaaagggaaaaaacaa
aaaaccttcaatgaaatcgatattgaaaccgccgcgccttacgccgccgaagacgccgac
atcaccctgcaattgcaccaaaccctgatgccgaaactgcaagccgagcccaagctggaa
accgttttccgcgacattgaaatgcccttggtgccggtactggcaaaaatggaacacacc
ggtgtcctcatcgaccgccagatgctggccgatcaatcctatgaactgggtgaaaaactc
acggcactggaacagaaagcccatttgattgccggcagcccttttaacttgaattcttcc
aagcaattgcaagagatcttgttcgaaaagctggatttaccgatcatcaaaaaaaccccg
aaaggccaaccgtccaccgctgaaccggtgctggtgcaactggccgaagacggccatgaa
atgccgaatctgattctggaataccgcagtctggccaagctgaaatccacttacaccgat
tcattacccaagcaaatcaatccgaacaccgggcgggtacacacctcttaccaacaagcc
gtggcctcaaccgggcgtttatcatccaccgaacccaacttgcagaatattccgattcgc
acccccgaaggccgccgcattcgtcaagccttcatcgccgatgacgggcaccaactgctg
gcggcggattattcgcaaatcgaactgcggattatggcgcatttatcgggcgatgccagt
ttgttaaaagcctttgccgaaggcaaggacattcaccaggccaccgcggcggaaattttc
aatatgccgttggaagaagtgacgtccgaacaacgccgtagcgccaaggccgtcaacttc
ggtttgatttacggtatgtccgccttcggcttggccaagcaattaaacatttcgcgtggc
ctagcacaggaatacatcaacctctatttttctcgttatccgggcgtggcggattatatg
gaaaacaccaaacaaaatgccaagcaaacgggttatgtcgaaaccctgatgggccgccgc
ttgtatctgcccgacatcaatgccaaaaacgggcaattgcgtcaatacgccgagcgcacc
gccatcaacgcgcctatgcaaggcaccgccgccgacatcattaaaaccgccatggtgaaa
atgcaggcctggttgaatgagacaacactggacatcaaaatgctgatgcaggtgcacgat
gaattggtgtttgaagtggccgagccagatatcgactcggcaaaatcagaaatcaaaacc
attatggaatccgccttaacccttgatgtgccgttgattgtcgaaatcggtcagggcaaa
aactgggacgaagcgcattga
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