Thiomicrospira sp. S5: AYJ59_01990
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Entry
AYJ59_01990 CDS
T05796
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ59_01990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thio03019
]
AYJ59_01990
03009 Ribosome biogenesis [BR:
thio03009
]
AYJ59_01990
Enzymes [BR:
thio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYJ59_01990
Messenger RNA biogenesis [BR:
thio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYJ59_01990
Ribosome biogenesis [BR:
thio03009
]
Prokaryotic type
rRNA helicases
AYJ59_01990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZR81177
UniProt:
A0A3S9TKX5
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All DBs
Position
complement(431348..433048)
Genome browser
AA seq
566 aa
AA seq
DB search
MNTEIKFADLGLSAPILKILTEIGYETPSPIQAQAIPVLLKGGDILGMAQTGTGKTAAFA
LPILSNIDLKQKSPQVLVLAPTRELAIQVAEAFQTFSRGIKGLHVLPIYGGSEYGTQIRA
LKRGVHVVVGTPGRVMDHIKKGTLKLDELSAMVLDEADEMLRMGFIDDVEWILKHTPDSR
QIALFSATMPKEVHRIANTYLKDPTEVIIKQKSSTASTIDQKYWLVSGLHKLDALTRILE
AEEFDGIIIFVRTKTATVELAEKLEARGYAAAALNGDIAQNQRERIVDQLKSGKLDILIA
TDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRSIE
ASTKKKIPQMELPTAQEINDSRIIRFKDKIVDAAQSNDLDFYQKMVESIESEQNIPAIEI
AAGLAKLLQGDVPFFLDEKPIKKAEFSDRGGDRNRREKSDRSPRGRRQTPPNEGMERFRI
EVGRQHGVKPGNIIGCIANEAGLDGEFIQKLNIEDDYSLVDLPSQMPKDIFNELKKAWVC
GQQLKIARIKDVAHSAKRRLKPRKKH
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaataccgagatcaaatttgccgatctagggctctctgcgcccattttaaaaatcctg
accgaaatcggttacgaaacgccgtccccgattcaggcccaagccattccggtactgctg
aaaggcggcgacattctgggcatggcccaaaccggaacggggaaaaccgccgctttcgcg
ttgccgattctgtcgaatatcgacttgaaacaaaagtcaccgcaagtgctggtgctggcc
ccaacgcgtgaactcgccatccaggtggccgaagccttccagaccttctcgcgcggcatc
aaaggcctgcacgttctgccgatttacggtggctcggaatacggcacacagatccgtgcc
ctgaaacgcggcgtacacgttgtggtgggcacgccgggccgtgttatggatcacatcaaa
aaaggcaccctgaagctggatgaattaagcgctatggtgttggacgaagccgacgaaatg
ctacgcatgggctttatcgacgacgtcgaatggattttgaaacacacgccggattcgcgt
caaatcgcactgttttccgccaccatgccgaaagaagtgcatcgcattgccaacacttac
ttaaaagacccgaccgaagtcatcatcaagcaaaaaagctcgacggcgtccaccatcgac
cagaaatactggctggtgagcggcctgcataagctggatgctttaacccgtattctggaa
gccgaagaattcgacggcatcattatcttcgtgcgcaccaaaaccgccacagtcgagctg
gctgaaaaattggaagcccgtggctatgccgccgcggccttgaacggcgacatcgcccag
aaccagcgggagcgcattgtcgaccaattgaaatccggcaagctggatatcctgattgcc
accgacgtcgtggcgcgtggtttggacgtcgagcgtatcagccacgtcatcaactacgac
attccttacgacaacgaatcctacgtgcaccgtatcggccgtaccggtcgtgccggtcgt
agcggcaccgccattttgtttgtggccccgcgtgaacgtcgtctgttgcgctccatcgaa
gcgtccaccaaaaagaaaatcccgcaaatggaactgccgaccgcgcaggaaatcaacgac
tcccgcatcatccgtttcaaagacaaaatcgtcgacgcggctcagtccaacgatttggat
ttctatcagaaaatggtcgaaagcatcgaaagcgaacagaacattccggccatcgagatt
gcggcaggcctggcaaaattgttgcaaggcgacgtgcctttctttctggacgaaaaaccg
attaagaaagccgagttttccgaccgtggcggcgatcgcaatcgccgcgaaaaaagtgac
cgctctccacgtggacgccgccagacgccaccaaacgaaggcatggaacgtttccgcatt
gaagtgggtcgtcaacacggcgtcaaaccgggcaatatcatcggctgtatcgccaatgaa
gccggtttggacggtgaattcatccaaaaactgaacatcgaagatgattacagcttagtg
gacttgccatcacagatgccaaaagatattttcaacgaattgaaaaaagcttgggtgtgc
gggcaacaattaaaaattgcacgcatcaaagacgttgcccacagcgccaagcgtcgtctt
aaaccccgtaaaaaacactaa
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