Thiomicrospira sp. S5: AYJ59_02060
Help
Entry
AYJ59_02060 CDS
T05796
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ59_02060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thio03019
]
AYJ59_02060
03400 DNA repair and recombination proteins [BR:
thio03400
]
AYJ59_02060
Enzymes [BR:
thio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ59_02060
Messenger RNA biogenesis [BR:
thio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYJ59_02060
DNA repair and recombination proteins [BR:
thio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYJ59_02060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
DUF3613
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AZR83115
UniProt:
A0A3Q9I5A2
LinkDB
All DBs
Position
449129..450952
Genome browser
AA seq
607 aa
AA seq
DB search
MAPERANTPLGVLQSVFGYEAFRSHQADIIEDVMAGQDCFVLMPTGGGKSLCYQVPAILR
SGTAIVVSPLIALMQDQVSALKANGVKAAYYNSTLDVQTADQVLMQLHTGQLDLLYVSPE
RLFNNTFLQQLQQLPIALFAIDEAHCVSQWGHDFRPEYRQIGQLRTFFPQVPFIALTATA
DEATRQDILQRLHLQQPKVHISSFDRPNIRYTVLEKRQPMKQLLRFLEARGEVQESGIVY
CLSRKRVEEVASQLQANGYNAQAYHAGLPGEVRHSVHQRFIRDEVDIVVATVAFGMGIDK
PNVRFVVHYDLPKNIEGYYQETGRAGRDGLASEALLLYGAQDVVTARHFVENQPDEHQRR
VEGFKLSSMVDFAESQTCRRRVLLNYFSEVTDSDCGNCDICLNPPEFFDATVSAQKALSC
VYRLNQGYGLRHVVEVLRGQDNERIRQLNHQALSTYGIGREHSAAEWDSILRQLIHLGYL
LQDIQQYSVLRLTEKAGEVLKGQVRLQLAKPRNPIGKTTRPGGKQQKADLSRVELERFET
LRRLRKEIADSEERPAYQVFGDAALIEMAQRMPQTDAELLQVSGVGESKLARYGFEFLAE
LRRLQQA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgagcgtgcaaatacgccattgggcgtgttgcaaagcgttttcggttatgaa
gcgtttcgttcgcaccaggccgatatcatcgaggatgtcatggccggtcaagattgcttt
gtgctgatgccaacggggggcggaaaatccttatgttatcaagtgcccgctatcttgcga
tccgggacggccatcgtcgtgtcgccgttgattgccttgatgcaagaccaggtcagcgcc
ttgaaagccaatggtgtcaaggccgcctattacaattccacgctcgatgtccagaccgct
gaccaggtattgatgcaactgcacaccggccagctcgatttgctgtatgtttcgccggag
aggctgttcaacaacacgtttttgcaacagcttcagcagctccccatcgccttgttcgcc
atcgacgaagcgcactgcgtgtcgcaatgggggcatgatttccggcccgaatatcggcaa
atcggccagctcagaacgtttttcccgcaggtccccttcattgcgctgacggcgacggcc
gacgaggccacccgtcaggacattttgcagcggttgcatttacagcagccgaaagttcac
atcagcagtttcgaccgtccgaatatccgctataccgtgctggaaaagcgtcagccgatg
aagcagttgttacggtttttagaggcgcgcggcgaggtgcaggaaagcggtattgtctac
tgcctgagccgtaagcgggtcgaagaggtggcgtcgcaattgcaggccaacggttacaac
gcgcaggcgtatcatgccggcttgccgggcgaggttcgccacagcgtgcaccagcgtttc
atacgggatgaggtggacatcgtggtggcgacggtggcgttcggcatgggcatcgataag
cccaatgtccgttttgtggtgcattacgatttgccgaaaaatatcgaaggttattatcag
gaaaccgggcgtgccggtcgggatggtctggcctccgaagccttgttgctttatggcgcg
caggatgtggtcacggcacggcattttgtggaaaatcagccggatgagcatcagcgtcgg
gtggaaggtttcaagttgagcagcatggtggattttgccgagtcgcagacttgtcgccgt
cgtgtattgttgaattatttcagcgaagtcaccgacagcgattgcgggaattgcgacatt
tgtttgaacccgcccgaatttttcgatgctactgtttcggcgcaaaaagcgctttcctgt
gtttatcggttgaaccagggatatggtttacgccatgtggtggaagtgttgcgcggtcag
gacaatgaacgaatccggcaattgaaccatcaagcgctgagtacttacggcattggccgg
gagcattcggcggcggaatgggacagtattttgcggcaattgattcatttgggctacttg
ctgcaggacattcaacaatattcggtcttgcggctcaccgaaaaagccggggaggtgctg
aaagggcaggtgcgcttgcagttggccaaaccccgtaatccaatcggaaaaaccaccagg
cctggtggaaaacagcaaaaagcggatttgtcccgtgtggagctggaacgtttcgaaact
ttgcgacgcttgcgaaaagagattgccgacagtgaagaacgcccggcatatcaggtgttc
ggcgatgcggcgctcatcgagatggcgcagcggatgccgcaaacagatgccgagttgttg
caagtcagtggcgtgggtgaaagtaagttggcgcgttatggcttcgaatttctggcggaa
ctccgtcgattgcaacaagcgtga
DBGET
integrated database retrieval system
