Thiomicrospira sp. S5: AYJ59_04530
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Entry
AYJ59_04530 CDS
T05796
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYJ59_04530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thio03400
]
AYJ59_04530
DNA repair and recombination proteins [BR:
thio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYJ59_04530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYJ59_04530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
AAA_22
Kinesin
DNA_pol_A
Microtub_bd
DUF7768
Motif
Other DBs
NCBI-ProteinID:
AZR81611
LinkDB
All DBs
Position
1008134..1010170
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AA seq
678 aa
AA seq
DB search
MAKAFEIVSSYQPAGDQPTAIAQLVEGLEDGEAFQTLLGVTGSGKTFTMANVIAQVQRPT
IILAHNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPASDTYIAKDSSVNEQIE
QLRLSATKALMERNDVVLIATVSAIYGLGDPDLYLKMILQLRLGDVISQRDILERLTSMQ
YTRNDVELWRGCFRVRGDVIDVFPAEAEEYAIRIELFDDEVDSLAWFDPLTGEVLSRPTR
ITVYPKSHYVTPRERVLETIDKIKDELVVRLQELRDANKLVEAQRLEERTRLDIEMMMEL
GYCSGIENYSRYLSGRGPGEPPPTLLDYLPKNALMFIDESHVTIPQIGGMYKGDRSRKEN
LVNFGFRLPSALDNRPMRFDEFERIMPQTIFVSATPAKYEEEHQSKIVEQVVRPTGLLDP
VLEVRPALTQVDDLLGEIGLRVDKEERVLVTTLTKRMAENLTEYLEEHNVRVRYLHSDID
TVERIEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNVAGKAILYGDKITDSMQRAIDESERRRAKQIEFNEMHGITPQKLNKKVADILEDSP
YAPRAGASAAKLKAAESEGDYDTSKAKAMTPAELASAIKRLEKQMYKAAKDLDFEQAAKL
RDEIKGLKTSMVGVGDLR
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagcatttgaaattgtttcttcctaccagccggccggtgaccaaccgactgcc
atcgcacaattggtggagggattggaagatggtgaagcctttcaaaccctgctgggggtg
accggttccgggaagacgttcaccatggcgaatgtcattgcacaggttcagcggccaacc
attattctggcgcacaataaaaccttggcggcgcagttgtatggcgagatgaaaagtttc
ttcccgcacaatgcggtggaatatttcgtttcctactacgattattatcaaccggaagcc
tatgtgccggcttccgatacttacatcgccaaagactcctcggtgaacgaacagattgag
cagttgcggttgtccgccaccaaagcgttgatggaacgcaatgacgtggtgctgatcgcg
accgtctcggcgatttacggcttgggtgatccggacctgtatttgaagatgattttgcaa
ttgcgtttgggcgatgtcatctcgcagcgtgatattctggaacgtttgacgagcatgcag
tacacccgtaacgacgtcgagctgtggcggggctgtttccgggtgcggggcgatgtcatc
gatgtctttccggccgaggcggaagagtatgccattcgcatagaattgttcgatgacgaa
gtcgattcgctggcctggtttgatcctttgaccggcgaagtcttgagtcgtccgacccgc
atcaccgtttatccgaaatcccattacgtgacgccgcgggaacgggtgttggaaaccatt
gacaaaatcaaggatgagctggtggtgcgcttgcaggaattgcgggacgccaacaagctc
gtcgaagcccagcgtttggaagaacgcacgcgtttggacatcgaaatgatgatggagctg
gggtattgttccggcatcgaaaactattcgcgctatctatccggtcggggcccgggcgaa
ccgccgccgactttgctggattacctgccgaaaaacgccctgatgttcatcgacgaaagc
cacgtcaccattccgcaaatcggcgggatgtataaaggggaccgttcccgtaaagagaat
ctggtcaacttcggtttccgtctgccgtcggcgttggataaccggccgatgcggttcgac
gaattcgaacgcatcatgccgcagaccattttcgtctccgccacgccggcaaagtatgag
gaagaacatcagtcgaaaatcgtcgaacaggtggtgcggccgaccggtttgctggacccg
gttttggaagtgcgcccggcgcttacccaggtggacgatttgttgggcgaaattgggttg
cgggtggacaaggaggagcgggtattggtgaccaccttgaccaaacgcatggcggaaaac
ctcactgaatacttggaagaacacaatgtccgggtgcggtacctgcattcggatatcgac
acggtggaacgaattgaaatcatccgcgatttgcggctgggcgaattcgatgtgttggtc
ggcatcaacctgttgcgggaagggctggatattcccgaagtctcattggtggcgattctg
gatgccgataaagaagggttcttgcgttccgaacgatctctgattcagaccattggccgt
gcggcgcgaaatgtggccggtaaggcgattctgtatggcgataaaatcaccgattcgatg
cagcgggccattgacgaatccgaacgccgccgcgccaaacagatcgagttcaatgaaatg
cacggcatcaccccgcaaaaactgaacaaaaaagtcgcggatattttggaagattcaccg
tacgcaccgcgtgccggtgcttccgcggcgaaactgaaagcggccgagtcagagggcgat
tatgatacgtcgaaagccaaggccatgacgccggcggaattggcgtcggccatcaagcgg
ttggaaaaacagatgtacaaagcggccaaggatttggatttcgagcaggccgccaagttg
cgtgatgaaatcaaaggcttgaaaacttctatggttggcgtgggcgatttacgttag
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