Thiomicrospira sp. S5: AYJ59_07460
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Entry
AYJ59_07460 CDS
T05796
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYJ59_07460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thio03400
]
AYJ59_07460
Enzymes [BR:
thio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ59_07460
DNA repair and recombination proteins [BR:
thio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AYJ59_07460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
AAA_30
SecA_DEAD
CbiX
Motif
Other DBs
NCBI-ProteinID:
AZR82134
UniProt:
A0A3Q9I5R5
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All DBs
Position
1628608..1632081
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AA seq
1157 aa
AA seq
DB search
MPKPYSLLEADQVPLKGQTSHWSLNTSAEDALVIMEKARNHPGLVVLLTQEMSEANKYED
ALNFFSEGDLSILNFPEWETLPYDQFSPHQDIISQRLRTLYQLPQTQKGILILPVSTLLQ
KVVPHTFIEQYTFILKCGDTLDIEPFTQRLESGGYQRVSQVMEHGEFAVRGSIIDLFPMG
SRTPFRLDLFDDEVETIRCFDPETQLSTEQIDQIELLPAKEYDLNPDGITLFKQRFRQTF
GDESRNSLLYQAVHNGQTVDGLEYYLSLFHTETATLFDYIPENSLFFNQPAIQDAIEQNW
RDYRERYQIAQHNPDYPVLPPEELIQSENDIFSALKNHHRIQLERIASGKNQVDFKTLPT
PDLNVQANSEYPMAKLNAFLDQYQSEYGGRILYCAESTGRRETLLTLLGKHTEFKGKVPK
IVDDWNAFKHNDLPHQIVVGPLEESIFTPDFCLISEAQIFGQTVIQKRRRKRKHSEFDTT
ISNLIELDIGSPIVHFDHGVGRYLGLETMTIQGEEHEFLMIEYAGEAKLYVPVTSLHLIS
RYTGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGHSFETDEEAY
ARFSASFPFEETPDQEAAIDAVVHDMQASKPMDRLICGDVGFGKTEVAMRAAFIAAYAGK
QVAVLVPTTLLAQQHMENFKNRFADWPVRIEGLSRFQTAKETKQILEAVQNKQVDIVIGT
HKLIQGDMKFDNLGLIIIDEEHRFGVRQKEQLKKLRTEVDVLTMTATPIPRTLNMAMNDL
RDLSIIATPPAKRLAVQTFVQEWNPDVVKEACLREIRRGGQIYLLYNNVDRIEQMAEDMR
ELLPEAKVDVAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADK
FGLAQLHQLRGRVGRSHHKAYAYMFTAGKSLMTTDAEKRLTAIAKHDTLGAGFMLASHDL
EIRGAGELLGDGQSGQIQEIGFGLYSELLERAVKSLKSGKQPELEAKLHTGAEIELGLPA
LIPEDYLPDIHTRLVFYKRIASADNTNGLQELEVEMIDRFGLLPPQVKNLFEATRVKLLI
EPLNLKKLEASESMIRIQFGDSPNINPVELIKLIQNHPKNYQLKGQTELKYFDTMPDMKQ
RINAIELIVATISNKDT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaccctactcgttgctggaagccgatcaggttccactaaaaggccagacgtca
cactggtcgctcaacacctcggccgaagacgcgctcgtcatcatggaaaaagcccgaaac
cacccaggcctggtggttttgctgactcaggaaatgagcgaagccaataaatatgaagac
gcgctgaacttcttttccgaaggcgacctttcgattctgaactttccggaatgggaaacc
ctgccctatgaccagttttcgccgcaccaggacatcatctcgcaacgcctgcgcacgctc
tatcaactgccgcaaacccaaaaaggcattttgatcctgccggtcagtaccctgttgcaa
aaagtggttccccatacgttcatcgaacaatacacctttatattaaagtgtggcgatacc
ctcgacatcgaaccctttacccaacgtttggaatccggcggctatcaacgcgtcagtcag
gtgatggaacacggcgaatttgcggtgcgcggctcgattatcgacctcttccctatgggc
agccgcacgcctttccgattggacttgttcgacgacgaagtcgaaaccatccgctgtttc
gacccagagacccagctcagcaccgagcagattgaccaaatcgaactcctgcccgccaag
gaatacgacctcaacccggacggcatcaccttattcaaacaacgcttccgccaaaccttc
ggggacgaatcgcgcaacagcctgttgtaccaagccgtccataacggccaaacggtcgat
ggcctggaatattatctatcgctgtttcataccgaaaccgccaccctgttcgattacatc
ccggaaaacagcctgttcttcaaccaaccggccattcaggatgccattgaacagaactgg
cgcgattaccgtgagcggtatcaaatcgcacagcacaacccggattatccggtactgccg
ccggaagaactgattcaatccgaaaacgacattttcagcgccctgaaaaaccatcatcgc
attcaactggaacgcatcgcctccggcaaaaaccaggtggacttcaaaacactgccgaca
ccggatttgaatgtacaggccaatagcgaatacccgatggccaaactcaatgcctttctg
gatcagtaccaaagcgaatacggcggccgcattctgtattgcgccgaatccaccggacgc
cgagaaacgctgttaacattgctcggaaaacacactgaatttaaaggaaaagttccgaaa
atcgtcgatgattggaatgcgttcaaacacaacgatttaccacatcaaatcgtggtcggc
ccgttggaagaatccatcttcacaccggatttttgcctgatttccgaagcgcagattttc
ggccaaaccgtcattcagaaacgacgccgtaagcgcaaacactccgaattcgacaccacc
atctccaacctcatcgaactggacatcggcagcccgattgtgcatttcgaccacggggtc
ggccgctaccttggcctggaaaccatgaccatccaaggtgaagaacacgaattcctgatg
atcgaatacgccggcgaagccaagttgtacgtgcccgtcacctcgctgcacctcatcagc
cgttacaccggcgccagcgccgaaaccgcaccgttacacaaactcggttccgacaaatgg
gacaaggccaaacgcaaagccgccgaaaaagtccgcgacgtcgccgccgaactgctcgac
atctacgcccagcgcgaagccaggcctggtcattctttcgaaaccgacgaagaagcctac
gcccgcttcagcgccagcttcccgttcgaagaaacgcccgaccaggaagccgccatcgat
gcagtggtgcatgacatgcaagccagcaaaccgatggaccgcctcatttgcggcgacgtc
ggcttcggcaaaaccgaagtggccatgcgcgccgccttcattgcggcttacgccggcaaa
caggttgccgtcttggtgccgaccaccctgctggcccagcaacacatggaaaactttaaa
aaccgttttgccgactggcccgtgcgcattgaaggcttatcccgtttccaaaccgccaag
gaaaccaaacagattctcgaagcggttcaaaacaaacaggtcgatatcgtcatcggcacc
cataagctgattcaaggcgacatgaagttcgacaacctcgggttgatcatcatcgacgaa
gaacaccgtttcggcgtgcgccagaaagaacaactcaaaaaactccgtaccgaagtggac
gtgctcaccatgaccgccacgccgattccgagaacgctgaatatggcgatgaacgattta
cgagacctgtcgattatcgccacgccgccggccaaacgtctggcggtgcaaactttcgtg
caagaatggaacccggatgtggtcaaagaagcctgtctgcgggaaatccgtcgcggcggg
cagatttacctgctttacaacaatgtcgaccgcatcgaacagatggcggaagacatgcgc
gaactcctgccggaagccaaggtcgacgtcgcccatggccaaatgcacgaacgcgaattg
gagcaggtgatgcagaatttctatcatcgccgtttcaacattctggtctgcaccaccatt
atcgaaaccggcattgacattccgaccgccaacaccattctgattcaccgtgccgacaaa
ttcggtctggcgcaattgcaccagttacgcggccgtgtcggacgttcgcaccacaaagcc
tatgcttatatgttcaccgccggtaaaagcctgatgaccaccgacgccgaaaaacgcctc
accgccatcgccaaacacgataccctcggtgccgggttcatgcttgccagccatgatttg
gaaatccgtggcgcgggtgaactgctcggtgacggccaatccggccagattcaggaaatc
ggtttcggcctctattcggaattgctggaacgcgccgtcaagtcgttaaaatccggcaaa
caacccgagctggaagccaagctccacaccggcgcggaaatcgaactcggtttgccggcc
ttgattccggaagactacctgccggacatccacacccgtctggtgttctacaaacgcatc
gccagtgccgacaacaccaacggcttacaggaactggaagtggaaatgatcgaccgtttc
gggctgctaccgccgcaggtcaaaaacctattcgaggccacgcgcgtcaaactgttgatt
gaaccgctgaacctgaaaaaactggaagcgtccgagtcgatgattcgcatccaattcggc
gacagccccaacatcaacccggtggaattgattaaattgattcaaaatcaccccaagaac
tatcaactaaaagggcaaacggaattaaaatatttcgatacaatgcctgacatgaaacaa
cgaatcaacgccatcgaactcatcgtggccaccatttcgaacaaggacacttaa
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