Thiomicrospira sp. S5: AYJ59_07705
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Entry
AYJ59_07705 CDS
T05796
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ59_07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thio03019
]
AYJ59_07705
03016 Transfer RNA biogenesis [BR:
thio03016
]
AYJ59_07705
Enzymes [BR:
thio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AYJ59_07705
Messenger RNA biogenesis [BR:
thio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AYJ59_07705
Transfer RNA biogenesis [BR:
thio03016
]
Prokaryotic type
tRNA degradation factors
AYJ59_07705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
S1_2
Bac_luciferase
KH_SLS1_2
KH_KhpA-B
TrkA_C
EFP
Motif
Other DBs
NCBI-ProteinID:
AZR82174
LinkDB
All DBs
Position
complement(1681741..1683825)
Genome browser
AA seq
694 aa
AA seq
DB search
MAKYVKSFQYGKHQVRLETGEIARQADGAVMVAMGDTQVLVTAVGAKSAKPGQDFFPLTV
QYQEKTYAAGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIIATVVSLD
PEVGTEVPAMLGTSAALAISGIPFDGPIGAAVVGYKDGDYLLNPSSEELLDSDLELSVAG
TSEAVLMVESEAAELSEEVMLGAVMFGHDQMQVAIDAIKEMKAEVGKPQWDWEAAAENTE
LKDKVYDLIRSDIEAAYSIADKMDRYAAIDAAKAKAMDALEATEENADGYEAGDIEKMVG
KLQKEIVRGRIIAGEPRIDGRDTQTIRQIDCQVGVLPKVHGSALFTRGETQALVVTTLGT
EKDAKIVDELTGSYSDRFMLHYNFPPYSVGECGRVGSPGRREIGHGMLARRGVSALLPTS
EEFPYTIRVVSEITESNGSSSMATVCGTSMSLMHAGVPIAAPIAGIAMGLVKEESGFAVL
SDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITGITREIMEIALGQAKDGRLHILKEMD
KAITASNVSVASTAPRFFNIKVKPEKVREIIGKGGATIRSITEETGVTIEIDDDGNVKIA
AVDDASAEAAKARIAEITAEPEIGKVYDAKVVKIVDFGAFVSYMPGREGLVHVSQIADER
VEDVNEYLKEGQEIQVRLIDIDKQGRVKLSIKEV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagtacgttaagtctttccagtatggaaagcatcaagttcgtttagagaccggt
gaaatcgcccgccaagccgatggtgcggtgatggtcgcaatgggcgacacccaagtattg
gtgacggcggttggggccaaaagcgcgaaaccggggcaggactttttcccgttgaccgtt
caatatcaggaaaaaacttatgctgccggtaaaattccaggcggtttcctgaagcgtgaa
ggtcgtccttccgaaaaagaaaccctgacttcacgtttgattgaccgtccgattcgtccg
ttgttcccgaaaggtttcatgaacgaagtgcaaatcattgccaccgtggtttccttggat
ccggaagtcggcaccgaagtcccggccatgctgggaacgtctgcagccttggccatttcc
ggcattccgtttgacgggccaattggtgcggcggttgtcggttataaagacggtgactat
ttgttgaacccttccagtgaagaattgttggattccgatttggaattgagcgtcgccggg
acatccgaagcggtcttgatggtggaatccgaagcggccgaattgtccgaagaggtcatg
ttgggtgcggtgatgttcggtcacgatcaaatgcaagtcgctattgacgccatcaaagaa
atgaaggcggaagtcggtaaacctcaatgggactgggaagcggcggcagaaaacaccgaa
ttgaaagacaaagtctacgatttgattcgcagcgatatcgaagcggcttattcgattgcc
gataagatggaccgttatgccgccatcgacgcggcgaaagccaaagcaatggatgcgttg
gaagcaacggaagagaacgccgacggttacgaggcgggcgacattgagaaaatggtcggg
aagttgcagaaagaaatcgtgcgtggtcgcattattgccggtgaaccgcgtatcgacgga
cgtgatactcagaccattcgtcaaatcgattgtcaggtcggtgtattgccgaaagtgcac
ggttccgccttgttcacccgtggtgaaactcaggcattggttgtgacgacattgggcacc
gaaaaggacgctaagattgtcgatgaactgaccggttcctattcggaccgtttcatgctg
cattacaacttccctccgtattccgtgggtgaatgtggtcgtgtcggttcgccgggacgt
cgtgaaatcggtcacggcatgttggcgcgccgcggggtttcggcgttgttgccgacgtct
gaagaattcccatacaccattcgtgttgtatcggaaatcaccgaatccaacggttcctct
tccatggccacggtgtgcggtacctccatgtcattgatgcatgccggtgtgccgattgcg
gcgccgattgcgggtatcgcgatgggcttggtaaaagaggaatccggttttgccgtcttg
tccgacattttgggcgatgaagatcacctgggcgacatggattttaaagtggccggtacc
gagcagggcgtgaccgctttgcagatggacatcaaaatcaccggtattacccgtgaaatc
atggaaatcgctttaggtcaggcgaaagacgggcgtttgcacattctgaaagagatggat
aaagccatcaccgcctcgaacgtcagtgtggccagcacggcaccacgcttctttaacatc
aaagtgaagccggagaaagtgcgtgaaatcatcggtaaaggcggcgcgaccattcgctcc
atcactgaagaaaccggtgttaccatcgaaatcgacgacgacggtaacgtgaaaatcgcc
gccgtggatgatgcgtctgcggaagccgcgaaggcacgcattgccgaaatcacggccgag
ccggaaatcggtaaggtctacgatgcgaaggtcgttaaaatcgttgatttcggcgcgttt
gtgtcgtatatgccgggtcgagaaggcttggtgcatgtgtcgcaaattgccgacgaacgt
gttgaagacgtcaatgaatatctgaaagaaggtcaggaaattcaggtacgtttgattgac
atcgacaagcaaggacgcgttaaactgtccatcaaggaagtgtaa
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