Thiomicrospira sp. S5: AYJ59_09360
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Entry
AYJ59_09360 CDS
T05796
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ59_09360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thio03019
]
AYJ59_09360
Enzymes [BR:
thio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYJ59_09360
Messenger RNA biogenesis [BR:
thio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYJ59_09360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AppA_4HB
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AZR82470
LinkDB
All DBs
Position
2022239..2023621
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AA seq
460 aa
AA seq
DB search
MSFNALGLSTPILDAIQQQGYETPSPIQQQAIPAVLEGRDVMAAAQTGTGKTAGFTLPIL
ERLSKGPSPKANQARALILTPTRELAAQVADSVATYGQHLPLKSTVVFGGVKINPQMMRL
RGGVDILIATPGRLLDLHSQNAVKFDQLEILVLDEADRMLDMGFIHDLKRIARLLPKDRQ
NLLFSATFSNDIRKLAQSFVQDPVEISVTPRNSTAETVAQQVYPVDKNRKSALLIHLIQE
HKWFQVLVFSRTKHGANRLTRQLETKGIRAAAIHGNKSQAARTRALSEFKDGKIQVLVAT
DIAARGLDIDQLPQVINFDLPNVAEDYVHRIGRTGRAGATGQAISLVSADEIKQLSDIEN
LIQKQIPRHIEDGFEPETDLPETRLNHRPKKPKKPKKPKKTNAPQGQTANEGATNDTPSN
KKPAPSRRRKPASNRKPSQNRSGQNPSGKRPNRSPKNTQH
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagctttaacgcccttggtttatccacccccattcttgacgccattcaacagcaaggt
tatgaaacaccgtccccgatccagcaacaagcgattcccgccgttctggaaggacgagac
gtcatggccgcggcccaaaccggcactggcaaaaccgccggttttacgttgccaatattg
gaacgcttatcaaaggggccgtctcctaaagccaaccaagcgcgcgctttgattctgacg
cccacacgtgaactggcggcccaagtggccgacagcgtggccacttacggccaacattta
ccgctcaaatccactgtggtattcggcggcgtcaaaatcaatccgcaaatgatgcgcctg
cgcggtggcgtggacattctgattgccacgcccggccgtctgctcgacttgcacagccaa
aacgccgtcaaattcgatcaattggaaatactcgtattggatgaagccgaccggatgctc
gacatgggcttcattcacgatctaaaacgcattgcccgtctgttaccgaaagaccgtcag
aatctattattttcagcgaccttttccaacgacattcgaaagctggcgcaaagcttcgtt
caagacccggtggaaatttccgtcacaccccgcaattccaccgccgaaaccgtggctcag
caagtttacccggtcgacaaaaaccgcaaatccgcactgttgattcatttaattcaagaa
cataaatggtttcaggtattggtgttctcccgtaccaaacacggcgccaaccgcctgacg
cgtcagctggaaaccaaaggcatccgcgccgctgccattcacggcaacaaaagccaagcc
gcccgaacgcgcgccttgagtgaattcaaggacggcaaaattcaggtactggtcgccacc
gacattgccgcgcgcgggttggacatcgaccaactgccgcaagtcattaacttcgatttg
cccaatgtggccgaagattacgtccaccgcatcggtcgtaccggtcgcgccggtgccacc
gggcaagccatctcactggtcagtgccgatgaaatcaaacaactgtctgacatcgaaaac
ctgattcaaaaacaaattccccgtcatattgaagacggttttgaacccgaaaccgacttg
ccggaaacccgtttgaaccaccgtccgaaaaagccaaaaaaaccgaagaagcccaaaaaa
accaacgctcctcaaggccaaacagcgaatgaaggtgctacaaacgacaccccatccaac
aaaaaaccggcgccttcccgaagacgcaaacccgcgtccaaccgtaagccgtctcaaaat
cgttccggccaaaacccatccggaaaacggccaaaccgttcccccaaaaacacccagcat
tga
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