Thiomicrospira sp. S5: AYJ59_09850
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Entry
AYJ59_09850 CDS
T05796
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ59_09850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thio03019
]
AYJ59_09850
03009 Ribosome biogenesis [BR:
thio03009
]
AYJ59_09850
Enzymes [BR:
thio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AYJ59_09850
Messenger RNA biogenesis [BR:
thio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYJ59_09850
Ribosome biogenesis [BR:
thio03009
]
Prokaryotic type
rRNA processing factors
AYJ59_09850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AZR82550
LinkDB
All DBs
Position
2126232..2128634
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AA seq
800 aa
AA seq
DB search
MKRMLINATQSEEVRIALVDGQKLYDLDVETPHHQKKKANIYKGTVTRIEPSLEAAFVDY
GAERHGFLPFKEVAEEYYPDNAKGERLSIKDILSEGQELIVQVQKEERGNKGAALTTQIT
LAGPYVVMMPNNPKAGGISRRIEGDDRSETRDALKDLDMPEGMGLIIRTAGVGKSTEELQ
WGVNYLVQLWEAIQKASAEKSAPFLIHQESDIVILAIRDYLRQDIGEIIIDDMETFHKAR
DFVQHVMPHQVYKVKPYQDTIPLFTRFQVESQIETAYTREVTLPSGGAIVIDITEALTSI
DINSSRSTKGGDIEETAYHTNLEAACEIARQLRLRDIGGLVVIDFIDMHSNRHQRDVENK
MREAVKSDRARVQIGKISRFGLLEMSRQRLRPSIEESTQMICPRCKGTGVIRGVQSLALS
VLRLLEEEAMKENTRRVTVQLPVEVATFLLNEKRHQITGIEDRHNLHILVIPNEHLDTPD
YRMERTRVGDDVPIDSSYKIKEVIAKDEAEQQAKPNVVKEEPAIKNMQPSTPPPAPKEEA
KPGLFTRLWKALFEQEEAEEPKKENRSRNNGRNGNRNNRSRNNNRRRSSDKEDSDKNDNR
RDNKRNDRNGPKADERKTEGKENRRRRSRSRNNNADKNETVADNKPANDNKSNKAKETKE
SKAAGKAVKNAETGSASSDKDNQESSSERPRRRSRYNTRSYNGRRRKPEGAETMSIHNLP
APEADKDAPKTPGDTQANEKPNAKAQTQVKTETTEAKPQADAKPAKAPKTEPKAETPVTE
SKADSTSDKTSEDALETTKS
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgctacgcagtctgaagaggtgcgtattgccttagtcgat
ggtcaaaaactatatgatctagatgtcgagaccccacaccaccaaaagaaaaaagccaat
atctataaaggaaccgtcactcgaatcgaaccgagtctggaagcggcttttgtagactac
ggcgctgaacgccacggttttttaccctttaaagaggtggccgaagaatactaccctgac
aatgccaaaggcgaacgcctgtccattaaagacatcctgtcggaaggtcaagaactcatt
gttcaggttcaaaaagaagaacgtggtaataaaggtgcggccttaaccacgcaaatcacc
ttggccggcccttatgtggtgatgatgccgaacaaccccaaagccggtggtatttcccgc
cgcattgaaggcgatgaccgttccgaaacccgcgacgcgctgaaagacctggacatgccg
gaaggcatggggctgattatccgcaccgccggtgtcggcaaatccaccgaagaactgcaa
tggggagtaaactatctggtgcaactttgggaagccattcaaaaggcgtccgctgaaaaa
agtgctcctttcctgattcaccaggaatccgacatcgtcatcttggccatccgggactac
ctgcgccaagacatcggtgaaatcatcatcgacgacatggaaaccttccacaaggcacgt
gattttgtgcagcacgtcatgccacaccaagtgtataaggtcaaaccgtatcaggacact
attccattattcactcgcttccaagtcgagtcgcaaatcgaaacagcctacactcgtgaa
gtgaccttgccgtccggtggcgccatcgtcatcgacatcaccgaagcgctgacatctatc
gacatcaactccagtcgctccaccaaaggtggcgacatcgaagaaaccgcctaccacacc
aacctggaagccgcctgcgaaatcgctcgccaactccgcttgcgtgacattggcggcctg
gtcgtgatcgatttcatcgacatgcactccaaccgtcatcagcgtgacgtggaaaacaaa
atgcgtgaagcggtgaagtccgatcgcgcccgtgtgcaaatcggtaagatttcacgcttc
ggcctgttggaaatgtcgcgtcagcgcttgcgcccgtccatcgaagaatccacccagatg
atttgcccacgatgcaaaggcaccggtgtcatccgtggcgtccaatcactggctctgtcg
gttctccgtttgttggaagaagaagccatgaaggaaaacacgcgccgcgtcaccgtgcaa
ttgccggtggaggtcgccaccttcctgctgaacgaaaaacgtcaccagattaccggcatt
gaagaccgccacaatctgcatattctcgtcattccgaacgaacatctggacacgccggat
taccgaatggaaagaactcgcgtcggtgacgacgtgccgattgattccagctacaagatc
aaggaagtgatcgccaaggacgaagcggaacaacaggccaagccgaatgtggttaaggaa
gaaccggccatcaagaatatgcaaccgagcaccccgccaccagcgccaaaagaagaagcc
aaaccgggcttgttcacgcgtttgtggaaagccttgttcgagcaagaagaagccgaagaa
ccgaaaaaggaaaaccgttccagaaacaatggacggaacggcaaccgcaacaaccgcagc
cgcaacaataaccgccgtcgctcatccgacaaggaagactctgacaagaacgacaaccgc
cgcgacaacaagcgcaacgaccgtaatggaccgaaagccgatgaacgcaaaaccgaaggc
aaggaaaaccgccgccgtcgttcccgttcacgcaacaacaatgcggacaaaaacgaaacc
gtagcggacaacaagccggcaaacgacaacaagtcgaataaagcgaaagaaaccaaggaa
agtaaagccgccggcaaagcggtgaaaaatgccgaaaccggttccgcttcatccgacaaa
gacaaccaagagtcctcctccgagcgtccaagacgccgtagtcgctacaacacccgtagc
tacaacggccgccgtcgtaagccggaaggtgcggaaaccatgtcaattcacaatttgccg
gcaccggaagcggacaaggatgcgcctaaaacaccaggcgacacccaggcaaatgaaaag
ccgaatgcgaaagctcaaactcaggtgaaaactgagaccacggaagctaagcctcaagcc
gatgccaaaccggccaaagctccgaaaacggaaccaaaagccgaaacaccggtcacggaa
tcgaaagcggattcaacgtctgacaagacctcggaagacgccttggaaactaccaaatcg
taa
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