Thiomicrospira sp. S5: AYJ59_12720
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Entry
AYJ59_12720 CDS
T05796
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
thio
Thiomicrospira sp. S5
Pathway
thio03420
Nucleotide excision repair
thio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYJ59_12720 (uvrD)
03430 Mismatch repair
AYJ59_12720 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thio03400
]
AYJ59_12720 (uvrD)
Enzymes [BR:
thio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ59_12720 (uvrD)
DNA repair and recombination proteins [BR:
thio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYJ59_12720 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AYJ59_12720 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZR83056
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All DBs
Position
complement(2732185..2734395)
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AA seq
736 aa
AA seq
DB search
MDISHILNDLNDAQREAVTVDDRHALILAGAGSGKTRVLVHRIAWLTEVMGFSAYNILAV
TFTNKAASEMRGRVEALIGNQSQGITMGTFHGIAYRLLRTHYQEAGLPQAFQILDADDQK
RVIKRLLKALELDEAQWPHKQVQAFINGEKEEGRRPHHIDAGHNPYVRKMVQIYQAYEEQ
CKRAGLVDFAELLLRAHELWLKNPQVLAHYQNRYRHILVDEFQDTNTLQYAWLRVLAGAT
GKLFIVGDDDQSIYGWRGAKIENIRRFDEDFSDVKTVRLEQNYRSTNVILKAANALIAHN
QDRMGKNLWSAGEDGEPIQIYEAFNEQDEARYICNQIEAWCEQGGSRSEIAVLYRSNAQS
RVMEQALLQAQIPYRVYGGLRFYDRAEIKDVLAYLRLLISREDDAAFERVYNHPPRGIGN
KTADQIREVARMEEISLWQAANQLVEAGLTARAKTSVNGFLTLIEALDQSTDGLDLQDQV
MQVVSRSGLQLHFEKDTSEQGQSRLENIDELINAVSQFKPMRTHESVADLPSDAFDEPNF
DNPLAEFLAQAALEAGEQQADHWESSVQLMTLHAAKGLEFPLVFMIGLEEGLFPSQQSQE
DPYRLEEERRLAYVGITRAEKQLMISYANRRRMHGSEFYPLPSRFLKEVPEDCVQHVRLK
GSTHATTAGYGGYGGGAAASLNESGYQVGERVFHQKFGEGMVLATEGAGDHARIQVNFNH
AGTKWLVAAFAKLEKL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcacacatattaaatgatttaaatgacgcccagcgagaagcggtgacggtg
gatgaccgtcatgccttgattctcgccggcgccggcagtggtaaaacccgggtgctggtg
catcgcatcgcttggttgacggaggtgatgggcttttcggcctataacattctggccgtg
accttcaccaataaagccgccagcgaaatgcgcggtcgggtggaagcgttgatcggcaat
cagtcgcaaggcattaccatgggcacgtttcacggcattgcctatcgtttgctgcgcacc
cattatcaggaagccgggttgccgcaagcctttcagattctggatgccgatgaccaaaaa
cgtgtgatcaagcggttattgaaagcgttggaactggacgaagcgcaatggccgcataaa
caggtgcaggcgtttatcaacggtgagaaagaagaaggtcgccgtccgcatcatattgac
gccgggcacaatccgtatgtgcgtaagatggtgcagatttatcaagcttacgaggaacag
tgcaaacgggcaggcctggtggattttgccgaattgctgctgcgcgcccacgaactgtgg
ctgaagaatccgcaagtgttggcgcattaccaaaatcgttaccgtcatattctggtggac
gaatttcaagacaccaataccttgcaatacgcctggttgcgggtgttggcgggcgccacg
ggcaaattgtttatcgtcggtgacgacgaccagtctatttacggttggcgtggggcgaaa
atcgaaaacatccgccgtttcgacgaggatttttccgatgtgaaaaccgttcgcctggag
cagaactaccgttccactaatgtgattttgaaagccgccaatgcgttgattgcgcacaac
caggaccggatggggaaaaacctttggagtgccggcgaagacggcgagccgattcaaatt
tacgaagccttcaacgagcaggatgaagcgcgctatatctgtaatcagattgaagcctgg
tgcgagcagggcggtagccgttcggaaattgcggtgttgtatcgttccaacgcccagtcg
cgcgtgatggagcaggcgctgttgcaagcgcagattccctatcgggtgtatggcggcttg
cggttttacgatcgcgctgaaatcaaagatgtgctggcttatctgcgcttgttgatcagt
cgcgaagacgatgccgccttcgaacgggtgtataaccacccgccgcgcggcatcggcaat
aaaaccgccgatcaaatccgcgaagtggcgcggatggaagaaatttcgctttggcaagcg
gccaatcagttggtggaagccggtttgacggcgcgtgccaagacctcggtcaatggtttt
ttgaccttgattgaagcattggatcaaagcaccgacggactcgatttacaggatcaggtc
atgcaggtggtgtcgcgctccggcttgcagctgcattttgaaaaggacacctccgagcaa
ggccaaagccgtttggaaaacatcgacgagttgattaatgccgtcagtcagtttaagccg
atgcggactcatgaaagcgtggcggacttaccgagcgatgcgtttgacgaaccgaatttc
gataatccgttggcggaatttctggcgcaagcggccttggaagccggagaacaacaggcg
gaccattgggagtcgtcggtgcagttgatgacgctgcatgccgccaagggcctggagttc
ccgttggtgtttatgattggcttggaggaagggttgttcccgtctcaacaatcgcaggaa
gacccgtatcggttggaagaagagcgtcgactggcctatgtcggcattacgcgggcggaa
aaacagttgatgatttcctacgcgaaccgccgccggatgcacggctcggagttttatccg
ttgccgtcgcgttttttgaaagaggtccctgaagactgtgtgcagcatgtgcgtttgaaa
gggtccacgcatgccacgaccgccggttacggagggtatggcggaggagctgcggcgtcg
ctgaatgaaagcggttaccaagtcggtgaacgggtgtttcatcagaagttcggggagggc
atggtgttggcgactgaaggtgccggtgaccatgcgcgcattcaggtgaatttcaatcat
gccggcaccaaatggctggtcgcggcctttgccaagctggagaagttgtga
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