Thiohalocapsa sp. PB-PSB1: N838_07945
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Entry
N838_07945 CDS
T07019
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
N838_07945 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thip03400
]
N838_07945 (recB)
Enzymes [BR:
thip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
N838_07945 (recB)
DNA repair and recombination proteins [BR:
thip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N838_07945 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_25
AAA_30
AAA_22
PDDEXK_1
AAA_11
DUF7474
NdhM
ResIII
Motif
Other DBs
NCBI-ProteinID:
QQO57723
LinkDB
All DBs
Position
complement(1906510..1910265)
Genome browser
AA seq
1251 aa
AA seq
DB search
MSTPLDLQSIPLHGLHLIEASAGTGKTFAIANLVLRMVLEDGIGVERILVLTFTKAATEE
LRERIASRLRAALAAVDGAEIADPILEQILRPLDTKIAQVRLAEAVSHMDEAAIHTIHAF
CQRLLRDNAFESGISFEPEMIQDESELRRLAAEDLWRRHMAKADSEQAAWMLSNWPNGPA
QLLATLGAYIGAAEFEVIPAPDTPPDAPPTPASDSNAPATHDDPMAPARAWRERVRSAWP
AARDQVLAVVRDSKALNRNSYKAAAIEQIPAAVETLLQAETMPSALPARFDLLTPTKLAK
ATKKGFETPQHPFFDLCGEMDNALLQSAHRLRRAHFLGDARAQLAEALSQAKEARRVLYF
DDLLSHTARVLSGPLQADLAARIRQDYPRALIDEFQDTDPLQYRIFRHVYDGQSACGLFL
IGDPKQAIYAFRGADIFTYMAARRHAEQAGNVWSLDTNWRSASALVHAVNTLFERAERPF
VYDHDIPFQPVKSGPKADAEPLSIDGSPVIPLELRWLPLAPEHCTKDGRRLSADGALRLA
AADCAARLADLLAQAAAGKVRIGDQPLAARDIAVLVRKHKEGVRMREALAQHGIASVSIG
NDSVFDTDEAAELALVLAALDEGADEGSIRTALATAMLGWTAARIAALDSDESGWDSLLT
RFDDYRQRWRKRGFLAAFWRLMEGEQVAANLRRMPDGERRLTNLLHLAELAQLASREHPG
IDNLLRWLSERNDPPGAERDEQLLRLESDAELVRIVTLHKSKGLEFPLVCLPFPWTNARP
LDKQQPVPFHADDGRACLDLGSDAIDHHRDLWLRETLAEGLRLLYVGLTRAKHLCLMHWG
AVNQVGTSPGAYLLYPDPALDGPADRMGKRDAAVLRAELEDLLTRAPEAIRIVDALPQHA
PTAPVAAAPPVPLSARQFTAAIRSDWRLTSYSGLAGGLERDRPDYDADAGSLLDTQTGPI
AQVLDTVEPEAAESADQDQPNGMQGSAGTEAALSGADNSALEQAPIDPVFQFPRGVRAGH
CLHEMFEHLDFTSAYGELLGNTVQQTLSRHGIETAWADTAQRLVTQVLDTPLADSDDAPL
LRNLPDMDRLNELEFHFPLQQVEPRRLSELIREQGYPDPGIGIEGAPLRGLMKGYIDLVF
RYNGRYYLADYKSNHLGDQLEDYARPLLQAAMTAHRYQLQYLIYSVALHRYLRQRIADYD
YATHFGGVFYLFVRGMRPHQGADFGVYHDRPEPVLIESLNALLSAASEPAA
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
ctgagcacaccgcttgatctacaaagcatcccgctgcacggcctgcacctgatcgaggcc
agcgccggcaccggcaaaacctttgccatagccaacctggtattgcgcatggtattggag
gacggcatcggcgtcgagcgcatcctggtgctgactttcaccaaggcggccaccgaggaa
ttgcgcgagcgcattgcctcgcgcctgcgcgccgcgctcgcggccgtcgatggcgccgag
attgccgacccgatcctggaacagatcctgcggccgctggataccaaaatcgcccaagtg
cgccttgccgaggccgtgagccatatggacgaggcagcgattcacaccatccacgccttt
tgccagcggctgctgcgggacaatgcgttcgaaagcggcatcagcttcgaacccgagatg
attcaggatgaatccgaactgcggcggcttgccgccgaagatctgtggcgccgccatatg
gccaaagccgattcggaacaggcggcatggatgctgtcgaattggcccaacggaccggca
cagctgctggcgaccctcggcgcctacatcggcgcggccgagttcgaggtgatacccgcc
ccagatacacctccagatgcacctccaacgccggcctcggactcgaacgcaccggccacc
catgatgatccaatggcaccggcgcgcgcctggcgcgagcgcgtgcgcagcgcctggccg
gcagcccgcgaccaggtcctcgcagtagtgcgcgacagcaaagcgttgaaccgcaacagc
tacaaggcagcagccatcgaacaaataccggccgcggtggaaaccttgctgcaggccgag
acaatgccgagcgcattgccggcacgcttcgacctgctgactccgaccaaacttgcgaag
gcgaccaaaaaaggcttcgagacgccgcaacacccgttcttcgacctatgcggcgagatg
gacaatgccctgctgcaatcggcgcatcgcctgcgccgcgcgcatttcctcggcgacgcc
cgcgcgcagctggccgaagccttgtcgcaggcgaaagaagcgcggcgcgtgctctacttc
gacgacctgctgagccacaccgcccgggtgctgagtggaccactgcaggcggatctggcc
gcgcggatacgtcaggactacccgcgcgcgctgatcgacgaattccaggacacggacccg
ttgcagtatcggattttccggcacgtctacgacggccagagcgcttgcggcctgttcttg
atcggtgatcccaaacaagccatctatgccttccgcggtgccgacatcttcacctacatg
gccgcgcgccggcatgccgagcaagcgggcaatgtctggtccctggacaccaattggcgc
tccgccagcgccctggtgcatgccgtgaacacgctcttcgagcgcgccgagcggccgttc
gtctacgaccacgacatcccgttccaaccggtcaaatccggccccaaagcagatgccgag
ccactctccatcgacggctcgcctgtcatcccgctggaactgcgctggctccccttggcg
cccgagcattgcaccaaggacggccgacgcctgagcgccgacggtgcgctcaggctggcc
gccgccgactgcgctgcacgcttggccgacctgcttgcgcaagccgcagccggcaaggtt
cgcatcggcgaccagcccttggcggcacgcgacatcgcggtgctggtgcgcaagcacaaa
gagggcgtgcgcatgcgcgaagccctggctcagcacggcatcgccagcgtcagcatcggc
aacgacagcgtgttcgacaccgacgaggcggcagagctggcattggtgctggcggcgctc
gacgagggcgccgacgagggcagtatccgcaccgcgctggccaccgcgatgctgggctgg
acggcagcgcgcatcgccgcgctggacagcgacgaaagcggctgggacagcctgttgacg
cgcttcgacgactatcgacagcgctggcgcaagcgcggcttccttgccgccttctggcgc
ttgatggagggcgagcaagtggccgcaaacctgcgtcgcatgccggatggcgaacggcgt
ctgaccaatctgctgcatctggccgaactggcccagctcgcctcccgcgagcatccgggc
atcgacaatctgctgcgctggctgagcgagcgcaatgaccccccaggcgccgagcgcgac
gaacaattgctgcgcctggaaagcgatgccgaactggtccgcatcgttacattgcacaaa
agcaaggggctggagttcccgctggtatgcctgccatttccctggaccaatgcgcgacct
ttggacaaacaacaaccggtgcccttccatgccgacgatgggcgcgcctgtcttgatctc
ggctcggatgccatcgaccaccaccgcgacctctggctgcgtgaaaccctggccgagggg
ctgcgcctactgtatgtcggcctcacccgggccaaacatctatgcttgatgcactggggt
gcggtgaatcaggttggcacctcgcctggcgcttacctcctctatcccgacccagcattg
gacggcccggcggatcgcatgggcaagcgcgatgccgccgtcctgcgcgccgaactggaa
gatctgctgacgcgcgcgccggaagccatccgcattgtcgatgccttgccccagcacgcg
cccaccgcccctgtcgccgcggcaccgccagtacccctatcggcaaggcagttcaccgcg
gcgattcgcagcgactggcgcctgaccagctattccggtctcgccggcgggctggaacgc
gatcgaccggactacgatgccgatgctggctcgctcctggatacccaaaccggcccgatc
gcacaggtgctggacactgtcgagccagaggcagcggaaagcgcagatcaggaccagcca
aacggcatgcaaggcagcgccggcaccgaggcggccctgtccggcgccgacaacagcgca
ttggaacaagcgcccatcgacccggtatttcaatttccccgcggcgttcgcgccgggcat
tgcctgcacgagatgttcgaacatctcgatttcaccagcgcatatggcgaactgttgggc
aatacggtgcaacagactttatcgcgtcacggcatcgaaaccgcctgggccgatactgcg
caacgactggtgacccaggtgctcgacacgcccctggcggacagcgacgatgcgccgctc
ttgcgcaatctgcccgacatggaccgactcaacgagctggagtttcatttcccgctgcag
caggtcgaaccgcgcaggctgtccgaactgattcgcgagcaaggctacccagacccgggc
atcggcatcgaaggcgccccgctgcgcggcttgatgaagggctacatcgatctggtgttc
cgctacaacggccgctattacctggccgactacaaatccaatcatctcggtgaccagctc
gaagactatgcccgtccgctgctgcaagcggccatgaccgcgcatcgctatcaattgcaa
tatctcatctacagcgtcgcattgcatcgctacctgcgccagcggatcgccgactatgac
tatgcgacccatttcggcggtgtgttttacctgtttgtccgcggtatgcgcccgcaccag
ggtgctgacttcggggtctatcacgaccgtcccgaaccggttctgatcgagtccctgaat
gcgctgctgagcgcagcatcggagcctgcggcatga
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