Thiohalocapsa sp. PB-PSB1: N838_10005
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Entry
N838_10005 CDS
T07019
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N838_10005 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thip03019
]
N838_10005 (pnp)
03016 Transfer RNA biogenesis [BR:
thip03016
]
N838_10005 (pnp)
Enzymes [BR:
thip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
N838_10005 (pnp)
Messenger RNA biogenesis [BR:
thip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N838_10005 (pnp)
Transfer RNA biogenesis [BR:
thip03016
]
Prokaryotic type
tRNA degradation factors
N838_10005 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
KH_KhpA-B
S1_RRP5
Bac_luciferase
Motif
Other DBs
NCBI-ProteinID:
QQO57781
LinkDB
All DBs
Position
complement(2359181..2361295)
Genome browser
AA seq
704 aa
AA seq
DB search
MYPVTPIHKQFQFGEQTVTLETGEIARQADGAVMIDVDDTVLLVTVVIDKRATELKDFLP
LTVDYQEKTYAAGRIPGGFFRREGRPSEGEILTSRLIDRPIRPLFSKGFGREVQVIATVK
SLNPAVNPEVPALLGVSAALAISGAPFNGPIGAARVGYKNGEYLLNQPMIGLNADSDLDL
IVAGTEKAVLMVESEARGLPEDIMLGAVMFGHEQMQVAIQAIREFAQQVGKEPLPIEAPA
TDAELTAAVENSAAERLREAYRIKDKMQRHDALGAIRAELFETLAGEDGQWEQPQVYAAC
EKLEKTIVRSAVLAGEPRIDGRDTKTVRPIRVRTGILPRTHGSALFTRGETQAIVVTTLG
TERDSQIIDALDGERREPFMLHYNFPPFCVGELGRVGSPKRREIGHGRLAKRGVLASMPG
LDEFPYSVRVVSEITESNGSSSMASVCGTSLSLMDAGVPIKAPVAGVAMGLIKEGNDFAV
LTDIMGDEDHLGDMDFKVAGTADGINALQMDIKIEGITQEIMQTALSQAKEGRMHILDEM
NKVINAHRAEMSEHAPRIIEFKIHPEKIRDVIGKGGATIRSITEETGATVDINDEGVVKI
FSVQKAAGEEAKKRIRLITADVEVGRIYEGKVARLMDFGAFVTILPGRDGLVHISQISEE
RVQSVSDKLSEGDLIKVKVLEVDKQGRIRLSMKAITDDERLSTN
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atctacccagtgacccccatccacaaacaatttcagttcggcgaacagaccgtaaccctg
gaaaccggagaaatcgcccgacaggctgacggcgccgtgatgatcgatgtcgacgacacc
gtgctgttagtcaccgtggtgatcgacaagcgtgccaccgaactcaaggactttttgccg
ctgaccgtcgattatcaggaaaaaacctatgctgccggccgcatccccggcggctttttc
cgacgtgaggggcgcccgagcgaaggtgaaatcctgacctcgcgcctgatcgatcggccg
atccgccccctgttttccaagggttttggccgcgaggtacaggtcatcgccacggtaaaa
tcgctgaacccggcagtcaatcccgaggtaccagcattgctcggcgtttccgcagcactg
gctatctccggcgccccattcaacggccccatcggcgctgcccgggtcggctacaaaaat
ggcgagtatctgctgaatcagcccatgatcggcttgaacgcggacagcgacctcgattta
atcgtcgccggaacagagaaagcggtattgatggtcgaatccgaggcacgcggcctgccg
gaagacatcatgcttggcgcggtgatgttcggccacgaacagatgcaagtcgcgattcag
gccattcgcgaatttgcccagcaggtaggtaaggagcctttacccatcgaggctccggca
actgatgcagaattgaccgcggcggtcgaaaacagcgccgccgagcgcctgcgcgaagcg
tatcgcatcaaagacaagatgcagcgccacgatgcgttgggcgccatccgagctgagctg
ttcgaaacgcttgccggcgaggacggtcaatgggagcagccacaggtctatgctgcttgc
gaaaagctggaaaagacaatcgtccgcagcgctgttttggctggcgagccgcgtatcgac
ggccgcgataccaagaccgtgcgacccatcagggtgcgcactggtatactgccgcgcacc
cacggctcggccctgttcacccgtggcgaaacgcaggctatcgtcgtcaccaccctcggc
accgagcgcgactcgcagatcatcgacgccctggatggcgagcgccgcgagccgttcatg
ttgcactacaacttcccgcccttctgcgttggagaactcggccgtgttggcagcccgaag
cgccgcgagatcggccatggtcggctggccaaacgtggtgttctggcctctatgcccgga
cttgacgagtttccgtactcggtgcgcgtcgtctccgagatcaccgaatccaatggatcc
agctccatggccagcgtctgcggcaccagcctatcgctgatggacgccggcgtgccgatc
aaagcgccggtggccggcgtcgcaatgggtctgatcaaagagggcaacgattttgccgtg
cttaccgacatcatgggtgatgaagaccacctcggcgacatggatttcaaggtcgccggc
accgccgatggcatcaacgctctgcaaatggacatcaaaatcgagggcatcactcaagaa
atcatgcaaaccgcgctgtcccaggcaaaggagggacgcatgcatattctcgacgagatg
aataaggtcatcaatgcccatcgcgccgagatgtcagaacacgccccgcgtattatcgaa
ttcaagattcatccggaaaagatccgcgatgtcattggcaaaggcggtgccacgattcgc
tccatcaccgaagaaaccggtgccaccgttgacatcaacgacgaaggcgtggtcaagatc
ttttcggtgcaaaaagccgccggggaggaggccaagaagcgcatccgcctgatcaccgcc
gacgtcgaggtcggccgaatctatgagggcaaagtggccaggctgatggactttggcgcc
ttcgtcaccatcctgcccggacgcgacggcctggtacacatctcccagatctccgaagaa
cgcgtgcaaagcgtcagcgacaaactcagcgaaggcgaccttatcaaggtgaaagtgctg
gaggtggacaagcagggccgcattcgcctgagcatgaaagccattacggatgatgagcgg
ctgtcgacgaattag
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