Thiohalocapsa sp. PB-PSB1: N838_13850
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Entry
N838_13850 CDS
T07019
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N838_13850 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
thip03000
]
N838_13850 (nifA)
Transcription factors [BR:
thip03000
]
Prokaryotic type
Helix-turn-helix
Other families
N838_13850 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
GAF_2
AAA_5
AAA
AAA_2
Mg_chelatase
AAA_3
AAA_16
HTH_23
Parvo_NS1
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QQO57869
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Position
3222428..3224020
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AA seq
530 aa
AA seq
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MTGIADTGAAEFDERQRVMLLESQLAALFDVSRVLNRSLELRDTLREVLRTLHDHGRMCM
GMISLLDENSGELLVGALHDNDAAPFEKIRYRPGEGINGRILETNQRWILPRLGDEPSFL
DRLNLFDPKLPLIGVPIRIGADDNAVGVFVTQPPVADGLLEQRARFAEMVANLIGQAVLL
SRSVEAERRALCEERDTLRRHLKGTHGFDNIIGHTERMRMVFDQARQVAKWSTTVLLRGE
SGTGKELIANAIHYNSPRARGALIKLNCAALPDNLLESELFGHEKGAFTGALSQRKGRFE
QADGGTLFLDEIGEITPAFQAKLLRVLQEGEFERVGGGRTMKVDVRVIAATNRNLEQEVK
DGIFREDLYYRLNVMPIVMPALRERIEDVPDLARHLVEKIAKQQARELKITDSALRVLMR
YDWPGNVRELENCMERAAVMSESGTIDRDVINLTGLDLGALPEPAGSYAQPAVATANIDL
DDPEIDERERVIAALEQAGWVQAKAARLLKMTPRQIAYRIQTLNIRVKQF
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaccggaattgccgatactggcgccgccgaattcgatgagaggcagcgcgtcatgctt
ttggaatcgcagctggccgcgttgttcgacgtcagccgcgtactgaatcgctcgctggaa
ctacgcgacactttgcgtgaggtgctgcgcacattgcacgatcatggccgcatgtgcatg
ggaatgatcagcctgcttgacgagaacagcggcgagctgttggttggcgccctgcacgat
aatgatgctgccccgttcgaaaaaatccgctatcgaccaggtgaaggaatcaacggtcgc
attctcgaaaccaaccaacgctggattctgccgcgccttggcgatgagccaagttttcta
gatcgtctcaatcttttcgatccgaaattgccgttgattggtgtgccgattcgcatcggt
gccgatgacaacgccgttggcgtgttcgtgacgcaaccgccggttgctgatggcctgttg
gagcagcgggcgcgctttgccgagatggtcgcgaacctgattggtcaagcggtattgctg
tcgcgttcggtggaggcagagcgacgcgccctgtgcgaggaacgcgataccctcaggcgc
catctcaaaggtacccatggcttcgacaacatcattggtcataccgagcgcatgcgcatg
gtcttcgatcaggcccgccaagttgccaagtggagtaccacggtgttgctgcgcggcgag
tccggcactggtaaagaactgatcgccaacgccattcactataactcgccgcgcgcacga
ggggcgctgatcaagcttaactgtgctgcactgccggataatctactggagtccgagctg
ttcggccacgagaagggcgccttcaccggtgcgctcagccagcgcaagggtcgcttcgaa
caggccgatggcggcactttgtttctggatgagatcggtgaaatcaccccggcatttcag
gcgaaattgctgcgcgtattgcaggagggcgaattcgagcgcgtcggtggcgggcgcacc
atgaaggtcgacgtgcgcgtcatcgcagccaccaatcgcaatctggagcaggaggtcaag
gacggtatattccgcgaggatctatactatcggctcaatgtcatgccgattgtcatgccg
gctttgcgcgaacgcattgaggacgtgcctgatcttgctcgacatctggtggaaaagatc
gccaaacagcaggcacgcgaactcaagatcaccgacagcgcattgcgcgtgctgatgcgc
tacgattggcctggcaatgttcgcgaactggagaactgcatggagcgggccgcggtcatg
agcgaatccggcaccatcgaccgcgatgtgatcaatctgaccggtctcgacctgggcgcg
ctgcccgagcctgctggcagctatgctcagcctgccgtggcaactgccaatattgacctt
gatgatccggaaatcgatgagcgcgaacgcgtcatcgcggcattggagcaggccggctgg
gtacaggccaaagccgctcgactattgaagatgacgccacgccagattgcgtatcgaatc
cagacgctgaatatccgcgttaaacaattctga
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