Thiohalocapsa sp. PB-PSB1: N838_15100
Help
Entry
N838_15100 CDS
T07019
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N838_15100 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thip03019
]
N838_15100 (rne)
03009 Ribosome biogenesis [BR:
thip03009
]
N838_15100 (rne)
Enzymes [BR:
thip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N838_15100 (rne)
Messenger RNA biogenesis [BR:
thip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N838_15100 (rne)
Ribosome biogenesis [BR:
thip03009
]
Prokaryotic type
rRNA processing factors
N838_15100 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
QQO57890
LinkDB
All DBs
Position
complement(3528059..3531415)
Genome browser
AA seq
1118 aa
AA seq
DB search
MKRMLINATQPEELRVAIVDGQQLFNLDIESPGREQKKANIYKGLITRVEPSLEAAFIDY
GADRHGFLPLKEISRGYFRQEIKPGSKINIRELMKEGQQVMVQIDKEERGTKGAALTTFI
SLAGRYLVLMPNNPRAGGVSRRIEGADRADLREALSQLGIPEDMGLIVRTAGVGKNAEEL
QWDLDYLLQLWDAIKASAEERKAPFLIYQESDIIIRSMRDHLRADIGEIVIDSQEMYRRA
EEFVRQVMPSNLKKLRLYQDEVPLFTRYQIESQIESAFQREVRLPSGGSLVIDHTEALTS
IDINSARATKGADIEETALNTNLEAADELARQLRLRDLGGLFVIDFIDMTPAKNQREVEN
RLRDALKQDRARVQIARISRFGLLEMSRQRLRPSLGDSSQIVCPRCKGQGSIRSVESLAL
SVLRILEEDAMKDSSVRLIAQLPVEVATFLLNEKRAAVMEIEQRHRVEVILLPNKHMETP
EYSIERIRLQEADRLADEEPSYMQTMQPDADPDPFARDQAPTRPEMPAVKSVTPSAPAPS
RHEPEHARGRQAGSPNASEQGKRNESMLKRIWTTLFASEDDLSGQQAPADEYGAQTDTNA
DSTQQHSGAQGRQHRPGWQEPDDQEPRNQPQQRSRARSGNDASGDASLNQQGEGGRQARS
NRRAQQPEDGQRNVRKGGRGRGRRGNADAQTRSDTPEEIQTSAQQRGRIAKAASEQALDD
TTLSGEQETNGSDSAALMLDQKQPEVMEPNAVSDDQTSSNAPLSGRRRTSRSNQEGPKQA
EATTASGAEVSTQGSTREPPATTGNSQGVAVAANGESHGNDDSDAAPNRPRSSRRRRGGR
RRRGSGSSQQSAEHGNQEVATQGEHGVQATHSGDKKTPSTHEPAKDPEPIQQAVEQISPA
AGNGMAEANQPASKPGAEPAVERLLPAHAAQTEQQPMDAQAPPEAEHGEHHQTPLPASAA
EHSAPSSSSTDQSLEQESQPQPHTYAASAALPETQQEQVQSTPETRPKTGIAEPASIAKP
EHFAKPQSVVDQASDGTPDQISATSTQDAPTPLQESVPEHAHFGFDLTTPKATQPPPDNM
KSTTPTSEQPSTTDTASEPQPTTDPQRPGKIDSESANG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaacccagcctgaagagctgcgggttgcgatcgtcgac
ggacaacaattgttcaatctggatatcgaaagtccgggccgagagcaaaaaaaggcgaat
atttacaagggcctgattacgcgtgtcgaacccagcctagaagcagccttcatcgactac
ggcgccgatcgccatggtttcctgccgctgaaggaaatctcccgcggttactttcgccag
gagatcaaaccaggctctaaaatcaacatcagagaattgatgaaagaaggccagcaggtg
atggtgcagatcgataaggaggaacgcggcaccaagggtgcagccttgaccaccttcatt
tctcttgccggtcgctatttggtgttgatgcctaacaacccgcgcgctggcggtgtgtct
cgacgcattgagggcgctgaccgcgccgatctgcgcgaggctctgagccagctcggcatt
ccagaggatatggggctgatcgtgcgcactgccggcgtcggcaagaatgccgaggaactg
caatgggatctggactatctgctgcagctctgggacgccatcaaagcctctgccgaagaa
cgcaaagcgccctttctgatctatcaagaaagcgacatcatcatccgctccatgcgcgat
catctgcgcgcggacatcggcgagatcgtcatcgacagccaggagatgtatcggcgcgcc
gaggagtttgtgcgccaggtcatgccgagcaacctgaaaaaattgcgcctttatcaggac
gaagtaccactttttacgcgttatcagatcgagagccagattgaatcggcatttcaacgc
gaggtgcgtctaccttccggcggctcgctggtcatcgatcataccgaagcattgacctcc
atcgacatcaattcagcacgcgccaccaagggtgccgacatcgaggagaccgcactcaat
accaacctcgaggcggccgatgaactcgcgcgccaattgcgcctgcgcgacctcggtggt
ctgttcgtcatcgacttcatcgacatgacgccagcaaaaaaccaacgcgaagtggaaaat
cggctgcgcgacgcactgaaacaggatcgtgctcgggtacagattgcacgcatctcgcgt
tttggcctgttggaaatgtcgcgtcaacgtctgcggccatcgctgggcgactccagccaa
attgtctgtccacgctgtaagggacaaggcagcatccgtagcgtcgaatcactggcgctg
tcggtgttgcgtatcctggaagaagatgcgatgaaagacagcagcgtgcgcctgatcgcg
caactgccagtcgaagtggcaaccttcctgctcaacgaaaagcgcgctgctgttatggaa
atcgaacagcggcatcgcgtcgaggtgattctgctgccgaacaagcacatggagaccccg
gagtacagtatcgagcgtatccgcttacaggaagccgaccgcctcgcggatgaagaaccg
agctacatgcaaacgatgcagccggatgcagacccggacccttttgcccgtgatcaagcg
ccgacacgccccgagatgccggcggtcaagagcgtgacgccgagcgcaccagcgccaagc
cgtcacgagcccgagcatgcacgcggtcgacaggctggatcgccgaatgccagcgaacag
ggcaagcgcaacgagagcatgctcaaacggatctggaccacgttgtttgcctccgaggac
gacctgtcgggacagcaagcgccagcagacgaatacggcgctcaaactgacacaaacgcg
gacagcacgcaacaacattcaggtgcacagggccgccaacaccggccaggctggcaagaa
cccgacgatcaagagccccgcaatcagcctcagcagcgctcccgcgcccgcagtggtaat
gatgccagtggcgatgcttcgctcaaccagcagggtgaaggcggcaggcaagcccgttcc
aaccgcagagcgcagcaacccgaagacggccagcgtaatgtccgcaaaggtggtcgcggc
cgaggtcgccgcggcaatgcagatgcccaaacccgctccgatacgcctgaagagatccag
acttccgcgcaacaacgcggccggatcgcaaaggctgcatctgagcaagcactggacgat
acgaccttaagcggagagcaggaaacaaatggctccgacagcgctgcgctgatgctggat
cagaaacaaccagaggtgatggagccaaacgccgtcagcgatgatcaaacctcttcgaat
gcgccattatcgggtcgtcgacgcacgagccgatccaaccaggaagggccgaaacaggct
gaagcgacgacagcgtccggtgcagaagtatcgacgcagggctcgacgcgggaaccaccg
gcgacgaccggcaatagccaaggcgtggcggtggcggcgaatggcgaatctcatggcaat
gatgacagcgacgctgcacccaatcgcccgcgatcaagccgccgccgtcgcggcggtcgc
cgccgccggggtagcggcagcagccaacagtccgcggaacatggcaatcaggaagtcgca
acccaaggagaacatggcgtgcaggcaacacattccggagacaagaaaacgcccagtacg
cacgaaccagccaaagacccagaacctatccagcaggccgtggagcagatctccccggca
gcaggcaatggcatggccgaagcaaaccaacctgcgagcaaacccggcgcagaaccggca
gtggagaggctgctgccagcgcatgctgcccagaccgagcaacagccgatggatgcacag
gcgccgcccgaggccgagcacggcgagcatcatcagacgccgctacctgcctctgcggca
gaacattcagcacctagcagttcatccaccgaccaaagtctggagcaggaatcgcaaccg
cagccccacacatatgcagcgtcggccgcattgcctgagacgcagcaagaacaagtacag
tcaacgccagaaacacgcccgaaaaccggcattgccgaacctgctagcattgccaaaccg
gagcacttcgccaaaccgcaaagcgttgtggatcaagcctctgatgggacccctgatcag
atctcagcaacatccacccaggacgcgccaacaccgcttcaggaatcggttcccgagcat
gcgcatttcggattcgacttaacgacaccaaaagcgacccaaccgccaccggacaacatg
aaatcgaccacgccaaccagcgaacaaccatccaccaccgatacagcgagcgagccgcag
ccgacaaccgacccacaaaggcccggaaagatcgacagcgagtctgcaaacggctaa
DBGET
integrated database retrieval system
