KEGG   Thiohalocapsa sp. PB-PSB1: N838_16010
Entry
N838_16010        CDS       T07019                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
thip  Thiohalocapsa sp. PB-PSB1
Pathway
thip03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:thip00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    N838_16010 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:thip02044]
    N838_16010 (tssM)
Secretion system [BR:thip02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   N838_16010 (tssM)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical Nup84_Nup100
Other DBs
NCBI-ProteinID: QQO54620
LinkDB
Position
3748078..3751674
AA seq 1198 aa
MKTLFAFVGKRWFLSLLGTLALALLVWFAGDLIALDGHVPLASPSVRLLVIGALFLSWVF
WQIGAMVRARLRNRGLVDQLAASRANDPDPAEAATAEELEILDERFQDALRLLKGSEVRH
RLGGRWIYQLPWYLMIGPPGCGKTTALLNSGLRFPLAEQIGKDPVQGIGGTRNCDWWFAE
DAVLLDTAGRYITQDSYEQVDSAAWQGFLGMLTKHRPRRPINGVLVAVSLADLLQQSAAE
RAAQALAIKQRLQELYTAFKIRFPVYVLFMKADLVAGFMDYFANLGKEAREQVWGTTLAL
DYEGAGPAPVDGLRDEYKLLIERLAQRRLARLQDERDARKRALIFAFPEQFAALEEPVDE
FVREVFTPSRYQVRPLLRGIYFTSGTQTGTPIDRVLAGIAANFGVAHSGQQAFAGTGRGY
FLARLFRDLVFPEANLAGLNPRLERRRRWLRNAAYAGAIGLILLAASAWTTSYYRNRDYT
QEVDAALLEIDAQLEALPLPRRDPLAMLPLLNAARQLPGGYADRNRGVPLLSGLGLNQGN
KLGPEAERAYRRILRKVLLPAIQLRLEDQVREAGGNPEFLYDVLRVYLMLDNPQHYDAEA
IQYWVGRDWERNLPRATTTEQRETLKDHLQALFEQRPTPLPLELDAGLIAQSRDILNRAP
LAERIYERLKREGVGAEFADFSITDAAGDYAKLVFERRSGRLLNDGIPALYTYEGYHQGF
AAQGQRLIDATAQETWILGAQARLGPGSEPESEPGSEPGSEEARRLLEDIRLLYMSDYVD
AWNDLLQDIDIVPPRDIHHAAEIARILADQQQSPLRRLLIAAARQTELDQRPDEIPNEDD
ASGPAPSDFLSRVDRYFDHGGQATPSTPEQAAPETYVTRRFSWLHDLVTAAEGQAAPIDK
ALGLLDQMHLQLKSVAAAATSGRGVLAAGESAEITDVKRMAAELPEPLSRIMANLAQDSA
DIVSGGMRAQLNRIWTAEVLPFCREAIHGRYPFERGSTRETTLHDFARLFGPDGLFDAFF
KQNLSQLADTSGLRWRWLGNGIGIPDEVLAQFQRASTVREAFFLGGGKLPAVEFELEPVS
LDARIQQLILDIGGQIVDYRQGPPSAQSLRWPSPQAPGRVRLVFVDGVGGRPSLTYSGPW
AWFRLLDSANLRATRQQELFRARFSLAGYRAEFNLRAVSVRNPFKLSELRGFRCPDRL
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgaaaacactgttcgcatttgtggggaaacgctggttcctgagtctgctcgggacgctg
gccctggctttgctcgtgtggtttgcaggcgatctgatcgccctggatggacatgtcccg
cttgcatcgccgtcggtgcgtttgctggtcattggagccctgttcctgagctgggtgttt
tggcaaatcggcgcgatggtacgcgcacggctgcgcaatcgtggcttggtcgaccaatta
gctgcatcccgagccaacgatcctgaccctgccgaggcggccaccgccgaagaactggag
atcctggatgagcgttttcaagacgccctgcgcctgctgaaaggttctgaagtccggcat
cggctgggcgggcgttggatctatcaactgccctggtatctgatgattggtccccccggc
tgcggcaagaccacggcgctgttgaattccggactgcgctttccgttggcagagcagata
ggaaaagaccccgttcagggtatcggcggcacccgaaactgcgattggtggtttgccgag
gacgcggtattgctggacaccgccggtcgctatatcacccaggacagctacgaacaggtg
gacagcgccgcctggcagggctttttaggcatgttgaccaagcaccgtccgcggcgcccg
atcaacggtgtgctggtcgcggtcagtctggcggatctgttgcagcagtcggcggccgaa
cgcgccgcacaggcgcttgcgatcaaacagcggttacaggaattgtataccgcgttcaag
atccgtttccctgtctatgtcctgttcatgaaggcggatctggtggccggcttcatggac
tattttgccaatctcggcaaggaggcgcgcgaacaggtttggggcacgaccctagccctg
gactatgagggcgctgggccggcaccggtagatggattgcgcgacgaatacaagctgctg
atcgaacgcctggcgcagcgtcggctggcgcgtttgcaggatgagcgcgatgcgcgcaag
cgtgccctgatctttgcttttcctgaacagttcgcggcattggaagaaccagtggacgag
tttgtgcgcgaggtctttactcccagccgctaccaggttcgcccactgttgcgcgggatt
tattttaccagcggcactcaaaccggcacgccgatcgaccgcgtactcgccggcatcgcc
gccaattttggagtggcgcactccggccaacaagcctttgcaggtaccgggcgcggctac
ttcctggcgcgcctgtttcgcgatttggtgtttcccgaggcaaacctggccgggctcaat
ccccgactcgaacgccgccgccgctggctgcgcaatgcagcctatgccggtgcgatcggc
ctgatcctgcttgccgcctcggcatggaccacaagctattaccgcaatcgcgactatacc
caagaggtcgatgcggcattgctggagatcgatgcgcaactcgaggctctgccattgccg
cggcgcgatccgttggcgatgttgccgctgctcaatgcggcgcggcaactgcctgggggc
tatgccgaccgcaaccgcggtgtgcccttgttgtccgggcttggcctcaatcagggtaac
aagctgggtccggaggcggagcgtgcctaccggcgcattctgcgtaaggtcttgttgccg
gccatccagctgcgtttggaagatcaggtgcgcgaggccggcggtaacccggaatttctg
tatgatgtgctgcgggtgtatctgatgctcgacaatccgcagcactatgacgccgaggcc
atacagtattgggtcggtcgggattgggagcgaaatctgccgcgtgcgacgaccactgaa
caacgcgagacgctcaaggatcatctgcaggccctgttcgagcagcgaccgacgccattg
ccattggaactcgacgccggattgatcgcgcaatcccgcgacatcctgaaccgcgctccg
ctcgccgagcgcatctacgaacgattgaagcgcgagggcgtcggcgccgaatttgcggat
ttctccatcaccgatgcagccggcgactatgccaagctggtattcgaacgccgcagcgga
cgcctgctcaacgacggcatacccgcactctatacctatgagggttatcaccaggggttt
gccgcgcaaggccagcgactgatcgacgcaaccgctcaggagacctggattcttggtgcg
caagcgcgtctgggacctgggtcggagccagagtcggagccaggttcggaaccaggttcg
gaagaggccaggcgtctgctcgaggatattcgcttgttgtacatgagtgactatgtggat
gcttggaacgacctgttgcaggatatcgatatcgtgcctccacgggacattcatcatgcc
gcggagatcgcgcgcattctcgccgatcagcaacaatcgccactgcgacgcctgctgatc
gcggcagccagacaaaccgagttggatcagcgaccggatgaaattccaaacgaagatgac
gccagtggcccagcaccgagcgatttcctgtcacgcgtcgatcgctatttcgaccatggc
gggcaggcaacgccctcaaccccagagcaggctgccccggaaacctatgtcacacgccga
ttcagttggttgcatgacttggttacagcagcagaaggccaggcagccccgatcgacaag
gcgctcggactgttggaccagatgcatttgcagctcaaatcggtggctgccgcggctacc
tccggacgcggtgtactggctgctggcgaaagcgccgagattaccgatgtaaagcgcatg
gcagccgagctgcccgaacccctgtcgcgcatcatggcaaacttggcacaagacagtgcc
gatatcgtctcaggcggcatgcgtgctcagctgaaccgtatctggacagcagaagtcttg
ccgttttgtcgagaagcgattcatggccgctatcctttcgagcgcggcagcacgcgcgaa
accacattgcacgacttcgcccggttgtttggtcccgacggattgttcgacgcgtttttc
aaacaaaatctgagccagttggcggatacctccggactgcgctggcgttggctcggcaat
gggatcggcatcccggacgaggtgttggcacaatttcaacgcgcatcgacagtgcgtgag
gcgttctttctgggtggcggtaaattacccgccgtcgagttcgaactggaacccgtctcg
ttggatgcccgaatacagcagctgattctggatatcggtggccagatcgtcgactatcgg
cagggtccacccagcgcgcaatcgctgcgatggccatccccacaagcgcccggacgagtc
cgcttggtgtttgtggatggcgtcggcggccggccaagcctgacctactccggaccctgg
gcctggtttcgactattggactcggccaacctgcgcgctacgcgtcagcaggaattgttc
cgggcgcggttctccctcgctggttatcgtgcagaattcaacctgcgcgccgtcagcgtc
cgcaatccgttcaaattgagcgaactgaggggattccgatgtccggatcggctatga

DBGET integrated database retrieval system