Thiohalocapsa sp. PB-PSB1: N838_17845
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Entry
N838_17845 CDS
T07019
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thip03016
]
N838_17845
Enzymes [BR:
thip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N838_17845
Transfer RNA biogenesis [BR:
thip03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
N838_17845
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
PH_23
Cyc-maltodext_N
Motif
Other DBs
NCBI-ProteinID:
QQO54936
LinkDB
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Position
complement(4192584..4194443)
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AA seq
619 aa
AA seq
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MHQAGSASNSPVNLPAARITTDSLVLYKIRPARVVSVGEKIEIEIDGGQTKRVRPKDILL
LHPGPLHRLADLTPRTGQLEEAWELLEGAETDLKELAELVYAEYTPATAWAAWELLSDGL
YFEGTPELIRPRSRDTIEQQRAERDAKARAQQEQAEFMTRLAEERIIAEDRARLAEVERL
ANQQAEHSRILKALDLPETPQSAHRMLVKVGYWPTQHNPYPARFGAAITDPDLPVPGVPD
EERLDLTHLPAYAIDDEGNQDPDDALSIDGERIWVHVADVAALVAPDSDMDREARARGAN
LYLPEGIINMLPGAVTEQLGLGLQQVSPALSFGFICADDGGLVDIDIRPTLIRATRLTYA
EAETSLADAPFERLVAAAERYRARRAAHGAASIELPEVALRVVNGELEIRPIDRHGSRAL
VTDLMLMAGEAAARFCSQRGLPIPYATQPAPEQIQQPEGMAAMYAYRRQFKPSRTSVEPG
SHFGLGLDVYARATSPLRRYADLLVHQQIRALLHDQQPLTAEQISARAGEADQSGVAVRR
TERQSNQHWKLLYLMQKKGWKGEAVVVELGDRKTTVIIPELALEGKVRAKQALALNQRIR
LSVVEVDLPDLDCRFRVLG
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcatcaagccgggtccgcatccaattctccggtcaatcttcctgccgcccgcatcacc
acggacagtctcgtgctgtataagatccgtcccgcgcgcgttgtctcggttggagagaaa
atcgaaatcgagatcgatggcggccagaccaagcgtgtgcggccgaaagatattctgctg
ttgcaccctggcccactgcaccggcttgccgatctgacgccgcgcaccggtcaacttgaa
gaagcctgggaattgctggaaggtgccgagaccgatctcaaggagttggcagagctggtc
tacgcagaatacacgcctgctaccgcctgggccgcttgggagctgttgtcggatggattg
tacttcgagggcacgccggagctgattcgcccgcgttcacgggataccatcgagcagcag
cgcgccgagcgcgatgccaaggcgcgtgcgcaacaggagcaggctgagttcatgacgcgc
ctggccgaggagcgcatcatcgccgaagaccgcgcgcgcctggcggaagtcgagcgcttg
gccaatcagcaggcagagcatagccgtattctaaaagccttggatctacccgaaacgccg
cagagcgcgcatcgaatgctggtcaaagtcggctattggcccacgcagcataatccttac
ccggctcgcttcggtgcggcgatcactgatccggacctgccggttcccggtgtgccggat
gaggagcggctcgacctgacgcatttgccagcctatgccatcgatgatgagggcaaccag
gatcctgacgatgcgctgagcatcgacggcgaacgcatctgggtgcatgtggccgatgtg
gcggcactggtcgctccggacagcgacatggaccgcgaggcacgcgcccgcggcgcaaat
ctgtacttgcccgagggcattatcaatatgctgccgggcgcggtgaccgaacaacttgga
ctgggtctgcagcaggtctctccggcgctctcgttcggattcatctgcgccgatgatggc
gggctggtggatatcgatatccgtccaaccctgatccgtgccacgcgcctgacttatgcc
gaagcggaaacgagcttggcggatgctccgttcgagcggctggtcgctgctgccgaacgc
taccgcgcgcggcgcgcggcgcatggcgcagctagcatcgaacttcccgaggtcgctctt
cgcgtggtcaacggcgagctcgagatccgccccatcgatcgtcacgggtcgcgggcactg
gtcaccgacctgatgctgatggccggagaggctgccgcgcgtttttgcagccagcgtggt
ttgccgattccctatgcgacccaaccagcgccggagcagatccaacagcccgagggaatg
gcggcaatgtacgcctatcgacgtcagttcaagccatcgcgtaccagtgtcgaacccggc
tcgcatttcggtttgggcctggacgtgtacgcgcgcgccaccagcccgctgcgtcgctat
gcggatctgctggtgcatcagcagattcgtgctctgctgcatgaccagcagccgctgacc
gccgagcagatcagcgctcgtgccggtgaggcggatcaatccggcgtcgccgtgcgtcgc
accgagcgacagtcgaaccagcattggaagctgttgtatttgatgcagaaaaagggctgg
aaaggcgaggctgtggtggtggagctaggcgatcgtaagacgactgtgatcattcctgaa
ttggcgctggaggggaaagtgcgggcaaagcaagctctagcactgaatcagcgcatccga
ctctccgttgtcgaagttgatttgccagacctggattgtcgctttcgtgtattgggctga
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