Thiohalocapsa sp. PB-PSB1: N838_21750
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Entry
N838_21750 CDS
T07019
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N838_21750 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thip03021
]
N838_21750 (rpoA)
03400 DNA repair and recombination proteins [BR:
thip03400
]
N838_21750 (rpoA)
Enzymes [BR:
thip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N838_21750 (rpoA)
Transcription machinery [BR:
thip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N838_21750 (rpoA)
DNA repair and recombination proteins [BR:
thip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N838_21750 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
BetaGal_dom3
DUF211
Motif
Other DBs
NCBI-ProteinID:
QQO55577
LinkDB
All DBs
Position
complement(5163852..5164865)
Genome browser
AA seq
337 aa
AA seq
DB search
MVDVSTGFLKPRIVKVEPVKGSLHRAKVSMEPLERGFGHTLGNALRRILLSSMEGYAVTE
VEIQGILHEYTTMEGVQQDVLEILLNLKQLAITLHGRDEATFTLSKVGPGPATAADIAID
HTADIANPELVIANLTGDIELSMSLTIRRGLGYEPATQREAEFGEDCPIGKLPLDASFSP
IRRVAIEVQSARVEQRTDLDRLVVDLETNGTIDPKDAIQRSAGILRDQLASFVDLDQAVG
TETTVDHVPEEPPFDPILVRPVDELELTVRSANCLKAENIYLIGDLIQRTEVELLKTPNL
GKKSLTEIKDVLATRGLSLGMRLDNWPPENIEELMVK
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtcgatgtcagtaccggatttttaaagcctcgcatcgttaaggtggagccggtcaaa
ggtagcctacaccgcgctaaggtttccatggagcccttagaacgaggcttcgggcacacg
ctggggaatgcgctgcgcaggattcttctatcatccatggaaggctatgcagtgaccgaa
gttgaaatccagggaatattgcatgagtacacgaccatggaaggggtgcaacaagacgta
ctagagattctactgaatctaaagcaactcgccattacgttacatggccgtgacgaagca
acattcacactgagcaaggttggacctgggccggccaccgctgcggatattgcaatcgac
catactgcggatattgcgaatcccgaactggtgatcgcaaacctgacgggtgatatcgaa
ctaagcatgtcactgacaatacgtcgtgggctggggtacgaacccgcaacgcagcgtgaa
gcagagttcggcgaggattgtccgattggcaaattgccgctagatgcctcattcagcccg
attcgacgagttgcaatcgaagtgcaatcagcgcgcgtcgagcagcggaccgatctcgat
cgcttagttgtcgatctcgagaccaatggcacgattgatcctaaggatgccattcaacga
tcggccggcattttgcgggatcagttggcaagttttgtggatctcgatcaggcggtcggg
acagaaacaacggttgaccatgttcctgaggagccaccattcgatcctatcctggtgcgt
ccggtagacgaactggaactgaccgtgcgttcggcgaactgcttgaaagccgaaaatatt
tatctcattggagatctgatccaaaggaccgaggtcgagcttctgaagaccccgaacctt
ggcaaaaagtccctgaccgagattaaggatgtactcgctacgcgcggactctccctcggt
atgcggttagataattggccgcccgagaatatcgaagaactgatggtcaagtaa
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