Thiohalocapsa sp. PB-PSB1: N838_22910
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Entry
N838_22910 CDS
T07019
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thip03016
]
N838_22910
Enzymes [BR:
thip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N838_22910
Transfer RNA biogenesis [BR:
thip03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N838_22910
Prokaryotic type
tRNA splicing ligases
N838_22910
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QQO55775
LinkDB
All DBs
Position
complement(5400325..5401500)
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AA seq
391 aa
AA seq
DB search
MPIQRVLTTGRVPVKIYTDDVSENALQQLANVSQLPFIHHHVAAMPDVHWGMGATIGSVI
PTVGAIVPAAVGVDIGCGMSAIRLSLTAEKLPDSLVKVRAAIEKVVPVGMAGHAEDAWCN
DGLARVAPGLQPILDKHPKINARWQSQLGSLGGGNHFIELCLDEVDRVWVMLHSGSRGIG
NRIGQYFIAKAQREMERWHIQLPDKNLAYLPEESELFEDYMQAVGWAQEYALENRRQMLR
LILDALRRELPSHEVTDEAIECHHNYVAREYHYGKNLYLTRKGAIRARDGDLGIIPGSMG
ARSYIVRGKGVASAFCSCSHGAGRRMSRGEATRRFTRKDLEQQTEGVECRKDKGVIDEIP
GAYKDIDTVMAHQSDLVDVVHRLKQVLTVKG
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcctatccaacgtgtattgaccacaggccgtgtcccagtcaagatctacaccgacgac
gtctccgagaacgctctgcagcagctggccaacgtctctcagctgccattcattcaccac
catgttgcggcgatgcccgatgtccactggggcatgggtgccaccatcggctcggtgatc
ccgactgtcggcgccattgtgccggcggcggtcggtgtcgacatcggctgcggcatgagc
gcaatccgattgtcgctgacggcggagaaactgccggactcgctggtcaaggtccgcgcc
gcgatcgaaaaggtcgtgcccgttggcatggctggtcacgccgaggatgcctggtgcaac
gatggtctggctcgtgtcgccccggggcttcagcccatcctcgacaagcatccgaagatc
aatgcccgctggcaaagccagctcggcagcctgggcggcggcaaccacttcatcgaactt
tgtctggacgaggtcgatcgggtctgggtcatgctgcactcgggctcgcgcggcatcggc
aaccgcatcggccagtactttatcgccaaggcccagcgcgagatggagcgttggcacatc
caattgccggataagaacctggcctacctgccggaggagagcgaattgttcgaggattac
atgcaggcggtcggctgggcgcaggagtatgcgctggagaaccgccgccaaatgctgcgg
ctgatcctggacgccctgcgccgcgaattaccaagccatgaagttaccgatgaggcgatc
gagtgccaccacaactatgtcgcccgcgagtaccactatggcaaaaacctgtacctgact
cgcaagggcgcgatccgtgcccgcgatggcgacctgggcatcatccccggcagcatggga
gcccgctcttacatcgttcgcggcaagggcgttgccagcgcgttctgctcctgctcccac
ggcgcgggtcgacgcatgagtcgcggcgaggccactaggcgcttcacccgcaaagacctg
gagcagcagaccgagggcgtggagtgccgcaaggacaagggcgtgatcgacgagatcccg
ggtgcctacaaggacattgacaccgtcatggcgcaccagagcgacctggtggatgtggtg
cacaggctcaagcaggtactgacggtcaagggatga
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