Thiohalocapsa sp. PB-PSB1: N838_23475
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Entry
N838_23475 CDS
T07019
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thip03032
]
N838_23475 (topA)
03400 DNA repair and recombination proteins [BR:
thip03400
]
N838_23475 (topA)
Enzymes [BR:
thip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
N838_23475 (topA)
DNA replication proteins [BR:
thip03032
]
Prokaryotic type
DNA Topoisomerases
N838_23475 (topA)
DNA repair and recombination proteins [BR:
thip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
N838_23475 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Toprim_4
CENPH
Motif
Other DBs
NCBI-ProteinID:
QQO55860
LinkDB
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Position
complement(5515781..5518108)
Genome browser
AA seq
775 aa
AA seq
DB search
MNLVVVESPAKAKTIKKYLGPDFEVVASYGHVRDLIPKEGAVDPEHGFEMKYQIIERNEK
HVQTISKLLKKSDALYLATDPDREGEAISWHLFELLAKRKQIGDRPVYRVVFNEITKRAV
QDAVANPRELSQDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVER
ESEIEAFERREYWTVEADVKSEISTENGSENKLFSAKLVEFDGEKLEQFSITNEQRAQLV
EQTLNAAANGKLSVDRVERKQRKRNPAPPFITSTLQQEAARKLGFTAQRTMRTAQQLYEG
IDIGGGAVGLITYMRTDSVNLAQEALAELRDYIAERYGSDHLPPEPRTFKTKSKNAQEAH
EAVRPTSIRNLPKQIEAHLTKEQFRLYELIWKRTVACQMAPALLNLVSIDLGAGAGNRFR
ATGSTIAKPGFMAVYLEGRDDAKSADDDEERMLPQLEQGDQVDLIAIRPEQHFTEPPPRY
TEASLVKALEELGIGRPSTYASIISTLQDREYVLLEQKRFTPTDVARVVNKFLTKHFTSY
VDYDFTARLEDELDAISRGEEDWIPLLENFWRPFKDRIEHTQDNVQRSDVTQEIIDELCP
KCGGQLSKRLGRNGLFIGCTNYPDCDYTRDLNAEKSEADTPEIIQDRACPDCGSELSIKR
GRYGKFIGCTAYPKCKYIEPLEKPEDTGIVCPQCNAGTLQKKKSRRGKIFYSCSTYPKCN
YAVWNEPIDESCPQCNWPILTLKVTKTKGAQKVCPQKECNYIASAEQQETAESES
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgtcgtcgtcgaatctcctgccaaagccaagactatcaagaaatatctcggc
cccgattttgaggtcgttgcttcctacggtcatgtgcgtgatctgatcccgaaggaaggt
gccgtcgacccggagcacggctttgagatgaaatatcagatcatcgagcgcaacgaaaag
cacgttcaaaccatttctaaattgctgaaaaagtccgatgccctgtatctagccactgac
ccggaccgcgaaggtgaggcgatctcttggcacctgttcgaactgcttgccaagcgcaaa
cagatcggtgatcgacctgtctatcgagttgtctttaatgagatcaccaagcgcgcagtg
caagatgccgtggccaatccgcgggaattgtcccaggatctagtcaatgcgcagcaggcg
cgtcgagctctggactatttggtcggcttcaatctgtcgccgctgctgtggaaaaagatc
cggcgcggactgtctgctggaagagtgcagagtccagcgctgcgactcatcgttgagcgc
gagtcagagatcgaagcctttgagcggcgcgaatactggaccgtcgaggccgatgtcaag
tctgaaatcagcacggagaacggctccgaaaataaactcttttcggctaaactggttgaa
ttcgacggcgagaaactcgaacaattcagcattacaaatgaacagcgcgcccaattagtg
gaacagaccctgaacgctgccgccaacggtaagctcagtgtcgatcgggtagaacgcaag
cagcgcaagcgtaatccggcgccgccatttatcacgtctacactgcaacaggaggccgca
cgcaaactaggctttaccgcgcaacggaccatgcgcaccgcccaacagctctatgagggt
atagacatcggaggcggagcggtgggtctaatcacctacatgcgtaccgactcggtgaat
ctggcccaagaagcacttgctgaactgcgggattacatcgccgagcgctatggttctgat
cacctgcctcccgaaccacgcactttcaagaccaagtccaagaacgcccaggaggcacac
gaggcggtacgcccgacttccatccgcaatctaccaaaacagatcgaggcgcacctgacc
aaggaacaattccgactctatgagctaatctggaagcgaaccgtcgcctgccaaatggct
cctgcgctgttgaatctggtctcgatcgatctcggcgctggtgctggcaatcgctttcgt
gctaccggctccaccatcgccaaaccaggtttcatggcagtctacctagaaggccgtgat
gacgccaagtcagccgacgacgatgaagagcgcatgctgccgcaactcgagcagggcgat
caggtggatctgattgccatccgccctgaacagcatttcaccgagccgccaccgcgctat
accgaggcatcgctggtcaaggccctggaagaattaggtatcggccggccctccacctac
gcgtccattatttccacattgcaagatcgcgaatacgtgctgctggagcagaaacgcttt
acgcctactgatgtggcgcgagtcgtgaacaagttcctgaccaaacatttcacctcctat
gtcgattacgatttcaccgctcggctggaagatgaactcgatgccatctcgcgcggcgaa
gaagactggattccattgctggaaaacttttggcggccgttcaaagaccgtattgaacat
actcaggacaacgtgcagcgcagcgacgtaacccaggaaatcattgacgagctgtgccca
aaatgcggcggccagttatccaagcgcctgggccgcaacggcctgttcatcggctgcacc
aactatcccgactgcgactacactcgcgatctgaacgccgaaaaatccgaggccgacaca
ccggagatcatccaggaccgcgcttgtccggattgcggctccgagctatcgatcaaacgc
ggacgctacggcaaattcatcggctgcacggcatatcctaaatgcaaatacatcgagccg
ctggaaaaacccgaggataccggtatcgtctgcccccagtgcaacgctggcaccttgcaa
aaaaagaagtcccgccggggcaaaatattttattcctgttccacctatcccaaatgcaac
tacgcagtctggaacgaacccatcgacgagtcctgcccgcaatgcaactggcccatctta
accctcaaggtaaccaagaccaagggcgcgcaaaaagtatgcccgcaaaaagaatgcaac
tacatcgcctcggcggaacagcaggagacggcggagagcgagtcttga
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