Thiohalocapsa sp. PB-PSB1: N838_24135
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Entry
N838_24135 CDS
T07019
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N838_24135 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thip03400
]
N838_24135 (mfd)
Enzymes [BR:
thip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N838_24135 (mfd)
DNA repair and recombination proteins [BR:
thip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N838_24135 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
Glyco_tran_WecG
RecG_dom3_C
ERCC3_RAD25_C
AAA_30
DUF7267
Motif
Other DBs
NCBI-ProteinID:
QQO55976
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All DBs
Position
5702260..5705769
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AA seq
1169 aa
AA seq
DB search
MSPSAVPQTLPTSEPDHYHSPLHPPLPTRPGERLLWGRLYGAAAALAIASAAREAHRPLI
AVVPDMQAVMALCAELNFFLHGEDLPVLTFPDWETLPYDVFSPLPELISERLLTLHRLPQ
LTRGILVVPVSTLLQRLPPRDYVDGHSLVLEVGDRLHLEGTRQRLERSGYQCVSQVIAHG
EFAVRGALLDIFPMGSEQPLRIDLFDDEIESVRTFDPDSQRSIDKLQQVRMLPAREFPFT
DQAISGFRQRWRAAIDGDPKVSLIYREVSERRMPGGIEYYLPLFFEQTATLFDYLPDATL
IFEFVDARDAAHTALNAIQARYEQRRHDPERPLLPPRTLYLAADELASQLNNPAGVCWQT
AEVAERRKGYNAVCNFATDSLPALAIQARAAEPAAALQAFLDQPGRCTLLTAESTGRREM
LNDNLRGFRIQPAAVNDWRAFSTGKQPLAITIAPLEQALLLEREGLALITETQLYGEKIR
QERRRKARERDGEAVVRNLTELHEGAPVVHEDHGVGRFLGLKTIDVGGSRTEFLALEYAR
GDKLYVPVSSLHLISRYTGGAEENAPLHRLGSDQWDRVKKKAAQKAHDVAAELLDIYARR
AARQGIAFPDPGADYNAFADAFEFEETPDQQRAIEAILADMANPKPMDRVVCGDVGFGKT
EVAMRAAFVAITGGRQVAVLVPTTLLAQQHYENLSDRFADWPIKVESLSRFRSAKEVKRI
VEGLADGTVDIVVGTHKLLQPSIRFKNLGLAVIDEEHRFGVRHKEQLKNLRSEVDVLTLT
ATPIPRTLNMAMSGMRDLSIIATPPVERHPIKTFVSSWNDTLIQEACQREINRGGQIYFL
HNEVETIENMAQKLEALVPNARVDYAHGQMRERDLERVMRDFYHRRFNLLVCTTIVESGI
DVPSANTIVINRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPPKAMTEDAKKRLEAIES
LEDLGAGFTLATHDLEIRGAGELLGQEQSGQIHEVGFTLYMDLLERAVQALKSGHTPEID
RPLDHGAEIDLGLPALLPDDYLPDVHTRLITYKRIASAADAAELKDLQVEMIDRFGLLPE
PAKNLFAITGLKLEVQQLGIRKIEAGPKGGRILFGTQPNIDHMRLIKLIQSRPKDYKLDQ
AAGALRFSMDMTDPAKRNAQIQTILGQLV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccatccgcagtgccacaaaccttgcccacatctgaacctgaccattatcactcg
ccgctgcatccaccattgccgacgcggcccggcgaacgtctgctctgggggcgcctgtat
ggtgccgcggcagcactggccatcgcctcggcagcacgcgaggcgcatcgcccgctgatc
gccgtggttccggatatgcaggcggtcatggctttatgcgcggaactgaatttttttctg
catggcgaagacttgccggtgctgacctttccggactgggaaacgctgccctacgacgtt
ttctcgccattgccggagctgatatccgagcggctgctgacattgcatcggctgccgcag
ctcacccgcggcatactcgtggtcccggtcagtacattactacaacggctgcccccacga
gactatgtcgacggccactccttggtgctggaagtcggcgatcggctgcacctggagggc
acgcgtcaacgcctggagcgctccggctaccagtgcgtttcccaagtgatcgcgcatgga
gagtttgcggtgcgtggtgcattgctggacatcttcccgatgggcagcgaacaacccttg
cgtatcgatctgttcgatgacgaaatcgagtccgtccgcaccttcgatccggacagccag
cgttcgatcgacaaattgcaacaggtccgcatgctgccggcgcgggagtttcccttcacc
gaccaggcgatcagcggttttcgccaacgctggcgtgccgccatcgacggcgacccgaag
gtcagcctgatctatcgtgaggtctccgagcgacgcatgcccggtggcatcgaatactac
ctgccgctgttcttcgaacagaccgcaacgctgttcgactatttgcccgacgcaacgctg
atattcgaattcgtggacgcccgcgacgcggctcataccgcgctcaacgccattcaggcc
cgctacgaacagcgccgccacgatccggaacgtccgctgctgccgccacgcactctgtat
ctggcagcggacgaactcgccagccagctcaacaatccggctggcgtctgttggcagact
gccgaggtggcagaacgacgcaagggctacaacgcggtgtgcaattttgccaccgacagt
ctgccggcactggcgatccaggcgcgcgccgccgagcccgccgcggcattgcaggcgttc
ctcgaccaacccggacgctgcaccctgctgaccgcggaaagcaccggccgtcgcgaaatg
ctcaacgacaatctgcgcggctttcgcatccagcccgcggcggtcaatgattggcgcgcc
ttcagcaccggcaagcaaccgctggccatcaccatcgcaccgctggaacaagcactgttg
ctggagcgcgagggcctcgcgctgatcactgaaacacagctttacggtgagaaaatccgc
caggagcgcaggcgcaaggcgcgcgagcgcgatggcgaagcggtggtacgcaatctcacc
gaactgcacgagggcgcaccggtagtacacgaggaccatggcgtcggtcgcttcctgggc
ctgaagaccattgatgtcggcggcagccgcactgaattcctggccttggaatatgcgcgc
ggcgacaagctctatgtgccagtcagctcattgcatctgatctcccgctacaccggcggc
gccgaggagaatgcaccgctgcatcgcttgggcagcgaccaatgggatcgcgtcaagaaa
aaagccgcgcaaaaagcgcatgacgtggccgccgaattactggatatttatgcccgccgc
gctgcccgccaaggcatcgcgtttccggatcccggcgccgactacaatgcctttgccgat
gccttcgaattcgaggaaacgccggatcagcagcgcgcgatcgaggccatcctcgccgac
atggccaatcctaaaccgatggaccgggtggtctgcggcgatgtcggcttcggcaagacc
gaggtggcaatgcgcgccgcctttgtcgccatcaccggcggtcgtcaggttgcggtgctg
gtgccgaccaccctgttggcgcagcaacattatgaaaacctgtccgatcgcttcgccgac
tggccgatcaaggtcgagagcctgtctcgttttcgcagcgccaaggaagtcaagaggatc
gtcgaagggttggccgacggcacggtggatatcgtggtcggcacgcataaattattacag
ccgtcgatccgctttaaaaatctgggcttggccgtgatcgacgaggagcaccgctttggc
gttcgccacaaggagcagctgaagaatctgcgcagcgaggtcgatgtgctgacattgact
gccacaccgattccgcgcaccctgaatatggccatgtccggcatgcgcgatctctccatt
attgccaccccgccggtggagcgccacccgatcaagacctttgtctcgtcttggaacgac
accctgatccaggaggcctgccaacgcgagatcaaccgcggtgggcagatctattttctg
cacaacgaggtcgagaccatcgagaatatggcgcaaaagctcgaggcgctggtgccgaat
gcgcgcgtcgactatgcccacggccagatgcgcgagcgcgacctggaacgggtcatgcgc
gacttctaccaccgccgtttcaacctgctggtctgcaccaccattgtcgagagcggtatc
gatgtgccgagcgccaacaccatcgtcatcaatcgcgccgacaagctcggcctggcacaa
ctgcatcagttacgcgggcgcgtcgggcgttcccaccatcgcgcctatgcctatctgatc
acaccaccgccaaaggcgatgaccgaggacgcaaaaaagcgcctggaagccatcgaatct
ctggaagacctcggtgcaggcttcacactggcaacgcatgatctggaaatccgcggcgcc
ggcgaactgctcggccaggagcaatccggccagatccacgaagtcggcttcaccttgtat
atggacttgttggaacgcgccgtgcaggcgctgaaatccggccatacaccagaaatcgat
cgcccgctggaccatggcgctgagatcgatctgggtcttcctgccctgctgccggacgat
tatctgcccgacgtacacacccgactcatcacctataaacgcattgccagcgccgcggat
gccgccgagttgaaagatctgcaggtggaaatgatcgaccgctttggcctgctgccggag
ccggccaagaacctgttcgcgatcaccggtctcaagctcgaggttcagcagctcggcatc
cgcaaaatcgaagctggccccaagggtggtcgtatcctgtttggcacgcagccgaacatc
gaccacatgcgcctgatcaaattgattcaatcccgacccaaggattacaagctggaccaa
gccgccggcgcattgcgcttctcaatggacatgaccgatccggccaaacgcaatgcgcag
atccagaccatactcgggcagttggtgtaa
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