Thiohalocapsa sp. PB-PSB1: N838_32155
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Entry
N838_32155 CDS
T07019
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N838_32155 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thip03021
]
N838_32155 (rho)
03019 Messenger RNA biogenesis [BR:
thip03019
]
N838_32155 (rho)
Transcription machinery [BR:
thip03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
N838_32155 (rho)
Messenger RNA biogenesis [BR:
thip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N838_32155 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
QQO58206
LinkDB
All DBs
Position
complement(7629260..7630516)
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AA seq
418 aa
AA seq
DB search
MNLTELKKTPVPALVELAQTMEIDGVGRSRKQDLIFAILKAQAKRGEDIYGDGVLEILSD
GFGFLRSADASYLAGPDDIYVSPSQIRRFSLRTGDTISGKIRPPKDGERYFALLKVSDIN
FDRPENAKHKILFENFTPLFAQDRITLEIGNGSTEDLTARVVDLVAPIGKGQRGLIVSPP
KAGKTMMLQNIAQSIGHNHPDVFLIVLLIDERPEEVTEMSRSVRGEVISSTFDEPATRHV
QVAEMVIERAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLSIIATTLVDTGSRMDDVIYEEFKGTGNMELHLDRRIAEKRIFPSINI
NRSGTRREELLMPANELQKMWILRKILHPMDELAAIEFLIDKLKTTKTNNQFFDSMKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcacagaactcaaaaagacgcccgtgcccgcgctggtggaactggcacaaacc
atggaaatcgatggcgtcgggcgttcgcgcaagcaagatttgatcttcgcaatcctgaag
gcgcaagccaaacgcggcgaggacatctacggcgacggcgtgctggagatcctgtccgac
ggcttcggcttcctgcgctctgccgatgcttcctatctggcaggaccggacgacatctat
gtctcgccaagccagatccgacgcttctcgctacgcaccggcgataccatctcgggcaag
attcgaccacccaaggacggcgaacgctacttcgcgttgctcaaggtcagcgacatcaac
ttcgaccgcccagaaaacgccaaacacaagatcctgttcgaaaatttcacccccctgttt
gcccaggatcgcatcacgctggagatcggcaacggcagcaccgaggatctgaccgcgcgc
gttgtcgatctcgtggcgcccatcggcaaaggccagcgcggcctgatcgtgtcgccaccc
aaggctggtaaaaccatgatgttgcaaaatatcgcccagtccatcggccataatcacccg
gatgtcttcctgattgtgctgctgatcgacgagcgtccggaagaagtcaccgaaatgtcc
cgctcggtgcgcggagaggtgatctcgtccaccttcgacgagcccgccacacgccatgtg
caggtggccgagatggtcatcgagcgtgccaaacggctggtggaacacaagcgcgatgtg
gtcatcctgcttgacagcatcacgcgtttggcacgcgcctacaataccgtggtgccatcc
tctggcaaggtactcaccggcggcgtcgacgccaacgcgctacagcgtccaaagcgcttc
ttcggtgccgcgcgcaacgtcgaggaaggcggctccctgtcgatcatcgccaccaccctg
gtggacaccggttcgcgcatggacgacgtgatctacgaggaattcaagggcaccggcaac
atggagctgcatctggaccgacgcattgctgaaaaacgcatcttcccgtccatcaatatc
aaccgttccggcacccgccgcgaagaattattgatgccggccaatgagctgcaaaaaatg
tggattctgcgcaaaatactgcatccgatggatgaactggcggcaatcgagtttttgatc
gataagctcaagacgaccaagaccaacaaccagtttttcgactcgatgaaaggttga
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