Candidatus Thiothrix singaporensis: HZT40_00535
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Entry
HZT40_00535 CDS
T06729
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HZT40_00535 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
this03021
]
HZT40_00535 (rpoA)
03400 DNA repair and recombination proteins [BR:
this03400
]
HZT40_00535 (rpoA)
Enzymes [BR:
this01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HZT40_00535 (rpoA)
Transcription machinery [BR:
this03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HZT40_00535 (rpoA)
DNA repair and recombination proteins [BR:
this03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HZT40_00535 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QLQ30349
UniProt:
A0A7L6AMU8
LinkDB
All DBs
Position
89103..90107
Genome browser
AA seq
334 aa
AA seq
DB search
MTSKTTELLKPRNVXVQEAGLNTYRITLEPLERGFGHTLGNALRRILLSSIPGSAVTEVQ
ITGVVHEYTSIEGVQEDVVEILLNLKNLAIRLNARDEATLTLKKKGKGVVTAADIEQDHD
VEIINPGHVIAHITKDDTELEMSLTITRGRGYQPASVRRGXDSPELPLGTLVLDASYSPI
TRVAYNVDXARVEQRTDMDKLVLEIQTNGSINAEEAIGMAAQILQQQLAVFFDLRIEEPV
RREESQPEIDPILLRPVDDLELTVRSANCLKAENLFYIGDLVQRTETELLKTPNLGKKSL
TEIKDVLAQHGLTLGTKLDNWPPAGLDHRESKVG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaaaactacagaattgctgaagccgcgtaacgtccangtgcaagaggcgggt
ttgaatacctaccgtattactttggagccgttggaacgtgggttcggtcacacattggga
aatgcgttacgtcgtattttgttgtcctctattccgggcagcgcagtgacagaagtgcaa
attaccggcgtggtgcatgaatacaccagtattgaaggtgtgcaggaagacgtggtagag
attctgttgaatctcaaaaatctggccatccgtctgaatgcgcgtgatgaggcgacactt
acgctgaaaaagaagggcaagggtgttgtgactgcggctgatattgaacaggatcatgat
gttgaaattatcaatcctgggcatgtcattgcgcacatcactaaggatgatactgagctg
gaaatgagcctgaccattactcgtggtcgtggttatcaaccggcatccgttcgccgtggc
nnggattcgccggaattgcctcttggcacgttggtgttggatgcaagctatagcccgatc
acgcgtgttgcttacaatgttgacnnagcgcgcgtggaacaacgtacagatatggataaa
ttggtgttggaaatccagaccaatggttccatcaatgcagaagaagccatcggtatggcg
gcgcagattctgcaacagcagctggcagtgttctttgatctgcgtattgaagagcctgtg
cgtcgtgaagaatctcagccagaaattgatccaatattgctgcgtccggttgatgatctt
gaactgactgtgcgatcagctaactgtttgaaagcagagaatttattctatattggcgat
ttagtgcagcgtaccgaaaccgagctgcttaagacaccaaacttgggtaagaaatctctg
actgaaattaaagatgtgctggcacagcatggtttgacgctgggcaccaagcttgataat
tggccaccagcaggtcttgatcaccgtgaaagcaaagtgggttaa
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