Candidatus Thiothrix singaporensis: HZT40_01815
Help
Entry
HZT40_01815 CDS
T06729
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZT40_01815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
this03019
]
HZT40_01815
03009 Ribosome biogenesis [BR:
this03009
]
HZT40_01815
Enzymes [BR:
this01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZT40_01815
Messenger RNA biogenesis [BR:
this03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HZT40_01815
Ribosome biogenesis [BR:
this03009
]
Prokaryotic type
rRNA helicases
HZT40_01815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QLQ30564
UniProt:
A0A7L6AN80
LinkDB
All DBs
Position
complement(344372..346327)
Genome browser
AA seq
651 aa
AA seq
DB search
MSSETPTLPAFTELGLAAXVLQAVQALGYETPSAIQAATIPYLLEGRDVLGQAQTGTGKT
AAFALPLLSRLDLSKTXPQILILAXTRELAIQVAEACQQYASHLPDFHVMPIYGGQDYRT
QFRQLERGVHVVVGTPGRVMDHLRRETLKLDNLQALVLDEADEMLRMGFIEDIEWIMEQT
PATRQIALFSATMPPAIHRIAQSYLNNPAEVKIQLKTTTAETIRQRYWLVSGLHKLDALT
RILEAEPFDACIIFVRTKTETVELAEKLQARGYGAVALNGDIPQNVRERTVEQLKNGKID
ILIATDVAARGLDVERITHVINYDIPTDTESYVHRIGRTGRAGRSGDAILFVSPRERHLL
RAIERATRKPIELMELPSTETINNLRIAQFKQRITDTLEAEEGQDLYLQLISDYEREHNV
PALEVAAALARLLQGDEPMLLTEKDKHPAYNPAEADARKKGKKKSNVSNSVFSSEEDTIE
MERYRLAVGRVHGVKPGNIVGAIANEAGLDSRYIGHIDIQHDYSLVDLPAGMPKEILHDL
KRARVAGQMLNIEPTDESAADYSPNRGGKHKERDQSERRPRGDAPASHRRDTGRGERPDR
RPSSGKPGTDKPRFGSEKPKFGKDKPRFGGDKAKPGKKSPDKDKGKPKRFR
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagaaacccctactttgcccgcgttcaccgaactcggccttgccgccnccgtc
ctgcaagccgtgcaggcgcttggttatgaaacgccctccgccatccaggccgccaccatc
ccctacctgttggaagggcgcgacgtgctgggtcaggcgcagaccggcaccggcaaaacc
gccgcgttcgccctgccgctgctgtcgcggctggatttaagcaaaaccgnnccacaaatc
ctgatcctggccncgacccgcgaactggccatccaggtggccgaagcctgccagcaatac
gcctcccatttgcccgattttcatgtcatgccgatctacggcgggcaggattaccgcacc
cagttccgccaactggaacgcggcgtgcatgttgtggtcggcacaccagggcgcgtcatg
gatcacctgcgccgtgaaaccctcaagctcgacaacctgcaagcgctggtgctggatgaa
gccgatgaaatgctacgcatgggctttatcgaagacattgaatggatcatggaacagacc
ccggccacccgccagattgcgctgttctccgccaccatgccgcccgccatccaccgcatt
gcgcagagctacctgaacaatccggcggaagtcaaaatccagctcaagaccaccaccgca
gaaaccatccgccagcgttactggctggtcagcggcctgcacaaactggatgcgctgacc
cggattctggaggcggaacctttcgatgcctgcatcattttcgtccgcaccaaaaccgaa
acggtggagctggcggaaaaactgcaagcccgtggctacggcgcagtcgccctcaacggc
gacattccgcagaacgtgcgcgaacgcacggttgagcagttgaaaaacggcaagatcgac
atcctgatcgccaccgacgtggcggcgcgcgggctggatgtggagcgcatcacccatgtc
atcaactacgacatccccactgacaccgaatcctacgtgcaccgcattggccgcaccggg
cgcgcaggccgcagcggcgacgccatcctgttcgtttccccacgggaacgccacctgctg
cgcgccatcgaacgcgccacccgcaagccgatcgaactgatggagctgccttccaccgaa
accatcaacaacctgcgcatcgcccagttcaagcagcgcatcaccgacacgctggaagcc
gaggaggggcaggatctctacctgcaactgatcagcgactacgaacgcgaacacaatgtc
cccgccctggaagtcgccgccgccctcgcccgcctgttgcagggtgacgaaccgatgctg
ctgacggaaaaggacaaacatccggcctataaccctgccgaagcggacgcacgcaaaaag
ggcaaaaagaaaagcaacgtcagcaattcggtgttcagcagcgaagaagacaccattgaa
atggaacgctaccggctggcggttgggcgcgtgcatggcgtcaagccgggcaatatcgtc
ggcgcaatcgccaatgaagccgggctggacagccgctacatcggccatatcgacatccag
cacgactacagtttggtggacttgcctgccgggatgccgaaggaaatcctgcacgacctg
aagcgggcgcgggttgctgggcaaatgctcaatattgaaccgactgatgaatctgccgca
gactattcccccaaccgcggaggcaaacacaaggaacgtgaccagagcgaacgccgtccg
cgcggcgatgcccccgcatcccaccgccgcgacactggccgtggcgaacgccctgaccgg
cgtccttccagcggcaaaccagggacggacaagccacgttttggcagtgagaagcccaaa
ttcggcaaggacaaaccacgatttggcggcgacaaggccaagccaggcaaaaagtccccc
gacaaagacaagggcaaaccgaagcgcttcagataa
DBGET
integrated database retrieval system
