Candidatus Thiothrix singaporensis: HZT40_04415
Help
Entry
HZT40_04415 CDS
T06729
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HZT40_04415 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
this03400
]
HZT40_04415 (recB)
Enzymes [BR:
this01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HZT40_04415 (recB)
DNA repair and recombination proteins [BR:
this03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HZT40_04415 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QLQ30978
UniProt:
A0A7L6APF3
LinkDB
All DBs
Position
866386..869913
Genome browser
AA seq
1175 aa
AA seq
DB search
MQTLDAQRVPLEGTNLIEASAGTGKTWTLSWLYLRLIAVYGLKADXVLVVTYTEAATAEL
RDRIRKRLADALAFLEQRPCEETYGALLEETEAAVCIQRLRLALVSFDEAAVFTIHGFCK
RVLSENAFEARLPFESELAANEDSLLTELADAFWYQHFLAPDPLHLRLLQKHQLTPDSLL
ADVRHFIGKPYLQMEMPALTAAFADLQTAFDAAFDACQDIWKQERGAIVELLLAGALNGN
SYSKRNVPNWAGRLDALFAGASGMEAAADAVARFSSEVLAEKTKNGKATPVHDFFTQVDA
LLAAHSALCAGEQAALERLRLQLLLHLRRELPLRKQQLGILTFDDLLLHLHTALEQHPEF
APRLAAKYPAALIDEFQDTDPIQYEIFTRIYRDRPEQRVFYVGDPKQAIYGFRGADIHTY
LRAAQAASHRHTLKQNFRSRADLLQALNLLFAQSDNPFRSEIGYEPVAAGRDRAALQVEP
PLPPIRLWDWSSLEEGCNTPAVQERIADAVAHDIAGLLNAARAGRAAIGGRPVRSSDIAV
LVRENRQGELIKQALLARGVASVQQSRDNVFCTREASELRAVLRAVAEPGDEAALRQALV
TELCGFTASDLFALDEQPELLERQLEAFQGWRQTGHTQGFMPMFRQWMLQRNRYAHLLAL
ADGERRLTNLLHLAELIHTESRLRGHGMHALIRWLQQQAEAGAQDETHELRLESDENLVQ
ITTIHKSKGLEYGIVYCPYLWLERDPRAGSWFSWHDASLAGGGARLQPHALASDEALRQF
RASEQAESLRLLYVALTRAKYHCTIALVSGRINLFDYYSALGWLLFGQLEQGKEILGKLR
KDGMQPAERQGLMHQRLQAIVAEAAGLVSHELLPPEQDLIRCQPESGRVESSVRSYRHRL
PPAPRVGSFSGRAAGKEDERPDYDTLVWQSPLAHETARTAFPRGAKAGSCLHKMLEELDF
TRPLAGQRETVLSPALQRHGLPERWRTAAEALLENVLQTELPPAIRLADLPKQRRLDELE
FYFPVTRLQLKPLQALLHRFLPAEWEAIHAAVGRLKFNTLTGFMKGFIDLVFEAGGRYYV
VDYKSNELGAGWRDYTPAAMQEAMAEHHYYLQYLIYCLALHRYLRQRLAGYDWDKHVGGA
LYLFLRGMNPAEAGSGTVFHRPDAALMEALDHLIQ
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcagacactcgacgcccaacgcgtcccgctggaaggnaccaacctgatcgaagccagc
gccggaaccggcaagacctggaccttgtcctggctgtacctgcgcctgatcgccgtttat
ggcctgaaggccgaccangtgctggtggtgacctacaccgaagcggcgacggcggaattg
cgcgaccgtatccgcaaacggctggcggatgcgctggcgtttctggagcagcgtccctgc
gaggaaacctacggtgccttgctggaggaaacggaggcggcggtttgcatccagcgcctg
cggttggcgctggtcagtttcgatgaggccgcggtgttcaccatccacggtttttgcaag
cgggtgctgagtgaaaacgcctttgaagcccgcctgccgtttgaaagcgaactggccgcc
aatgaagacagcctgctgaccgaactggccgacgccttctggtaccaacatttccttgcc
cctgacccgctgcatctgcggctgctgcaaaagcaccaactgacgcctgacagcttgctg
gcggatgtgcgccatttcatcggcaaaccctacctgcagatggagatgcccgcgctgacg
gcggcgtttgcggatttgcagacggcgtttgacgctgcttttgatgcttgccaggacatc
tggaagcaggaacgtggcgctatcgtggagctgttgctggcgggcgcgctcaatggcaat
tcctacagcaagcgcaatgtgcccaattgggcaggcaggctggatgcgctgtttgcgggt
gcaagcgggatggaggcggcggcggatgcggtcgcccgtttttccagcgaagtgttggcg
gagaaaaccaagaacggcaaagccacgcctgtccacgattttttcacccaggttgatgca
ttgctggccgcccattccgccttgtgtgcaggcgaacaggccgcgctggagcgtctgcgg
ctgcaattgctgctgcacctgcgccgcgaattgccgttgcgcaagcaacagctcggcatc
ctcaccttcgacgacctgttgctgcatttgcatacggcgctggagcagcatccggaattc
gcgccacgtctggctgcgaaatacccggcggcgctgattgacgagttccaggataccgac
ccgatccagtacgaaatttttacgcgcatctaccgtgacaggccggaacagcgcgtcttc
tacgtcggcgaccccaagcaggcgatttacggtttccgnggggcggacatccacacctac
ctgcgggcggcgcaggcggcgagccatcgccataccctgaagcagaatttccgttcccgc
gccgatctgttgcaggcgctcaacctgctgtttgcgcagtccgacaatcccttccgcagc
gaaatcggttacgagccggtggcggcggggcgcgaccgagccgccttgcaggtggagccg
ccgctgccgcccatccgcctgtgggactggagctcgctggaggaaggctgcaacacnccc
gccgtacaggaacgcattgctgatgcggtcgcccacgacatcgccggtctgctcaacgct
gcccgcgcggggcgcgccgccatcggtgggcggccagtgcgcagtagcgacattgccgtg
ctggtgcgtgaaaaccggcagggcgagctcatcaagcaggcgctgctggcgcgcggcgtc
gccagtgtgcagcaatcccgcgacaatgttttctgcacccgtgaagccagtgagctgcgc
gccgtgttgcgggcggtcgccgaaccgggtgatgaagccgccctccggcaggcgctggtg
acggaactgtgcggttttacggccagtgacctgttcgccctcgatgaacagcccgagttg
ctggaacggcaactggaggcgttccagggctggcgccagaccggncatacgcaaggtttc
atgccgatgttccgccagtggatgctgcaacggaaccgttacgcccatctgctggcgctg
gcggatggcgaacgccgcctgaccaacctgctgcatctggccgaactgatccataccgaa
agccgtttgcgcggccatggcatgcatgcgctgatccgctggctgcaacagcaagccgaa
gcaggcgcgcaggacgaaacccacgagctgcgtctggaaagcgatgaaaacctggtgcag
atcaccaccatccataaaagcaaggggttggagtacggcattgtgtactgcccgtatctc
tggctggagcgcgacccacgggcaggaagctggttcagctggcatgacgcctcgctggct
ggcggcggtgcccgtttgcagccccatgcgctggccagtgatgaagccttgcgccagttc
cgtgcatcggagcaggccgagagcctgcgcctgttgtacgtggcgctgacccgcgccaaa
taccactgcaccatcgcgctggtcagcggacgcatcaacctgttcgattactattccgcg
cttggctggttgttgttcggccagttggagcaggggaaagaaatcctcggcaagttgcgc
aaggacggcatgcagcccgcagagcggcagggactgatgcatcagcgcctgcaagccatt
gtggcggaggcggcggggctggtcagccatgaattgctgccgccggagcaggacttgatc
cgctgccagccggaaagcgggcgggtggaatccagtgtccgcagctaccggcatcgcttg
ccgccagcgcccagggtcggcagtttcagcggccgngccgccggtaaggaagacgaacgc
ccggattacgacacgttggtctggcagtcgccgctggcgcatgagacggcgcgcaccgca
ttccctcgcggtgccaaggcgggcagttgcctgcacaagatgctggaggaactggatttt
acccggccattggcagggcagcgggaaaccgtcttgtcgcccgcgctgcaacggcacggt
ttgccggaacgctggcggacggcggcggaggctttgctggagaatgtgttgcagacggaa
ctgccgcccgccatccgcctcgccgacttgccgaagcagcgccgtctggatgagctggag
ttttattttccggtgacgcgcctgcaactgaagcccttgcaggcgttgttgcaccggttc
ctgcctgcggaatgggaagccatccacgccgctgtcgggcgcttgaagttcaacacactg
accggcttcatgaaggggttcatcgatctggtgtttgaggctggcgggcgctattacgtg
gtggattacaaatccaatgagctgggggcaggctggcgggactataccccagcggcgatg
caggaagcgatggcggagcaccattactacctgcaatacctgatttattgcctggcgcta
caccgttacctgcggcagcggctggccggttatgactgggataagcatgtgggcggggcg
ctgtacctgttcctgcgcggcatgaaccctgcggaggcgggttccgggacggtgttccat
cgcccggacgccgccctaatggaagcgctggatcacttgatccagtaa
DBGET
integrated database retrieval system
