Candidatus Thiothrix singaporensis: HZT40_04920
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Entry
HZT40_04920 CDS
T06729
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZT40_04920 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
this03019
]
HZT40_04920 (pnp)
03016 Transfer RNA biogenesis [BR:
this03016
]
HZT40_04920 (pnp)
Enzymes [BR:
this01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HZT40_04920 (pnp)
Messenger RNA biogenesis [BR:
this03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HZT40_04920 (pnp)
Transfer RNA biogenesis [BR:
this03016
]
Prokaryotic type
tRNA degradation factors
HZT40_04920 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
S1_2
KH_2
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QLQ31049
UniProt:
A0A7L6APM2
LinkDB
All DBs
Position
963244..965337
Genome browser
AA seq
697 aa
AA seq
DB search
MAKISKTFQYGSNTVTLEHGEIAKQATAAVMVNMDDTCVLVSVVGQRTVEVARDFFPLTV
DYQEKFYAAGRIPGGFFKREARATEEETLIARLIDRPLRPLFPDGFTNEVQIIALVVSMN
PAVPADIPAMIGASAALALSGMPFQPIGAARVGYREGQYLLNPSAEDLKTSNLXLVIAGT
ESAVLMVESEARELSEEVMLGAVMFGHEQMQVAIKAINEMAAEAGAVAWDWQAPTPDAAL
QAAVAGACEADLREAFQITEKQKRYARIDEILQAALEKLAAKEGEEGGFNPEQIKGEFKN
VEKKVVRGNILDGKPRIDGRDLQTVRPISVRLGVLPRAHGSALFTRGETQALVVTTLGTE
RDAQIIDAITGEYKDPFLFNYNFPPYSVGEVGRFGAPKRREIGHGRLAKRGVKSMLPNID
DFPYVIRCVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEEDRFAVLS
DILGDEDHLGDMDFKVAGSANGVTALQMDIKINGITKEIMQQALVRAKAGRLYILGEMAK
GIEAPRDEISQYAPRYVTMKINPEKIREVIGKGGETIRGITEKTGCSIDINDEGFIKIAA
VDAKAAYEARSMIEAITAEVELNKIYTGKVARIMDFGAFVTILPGKDGLLHISQISNERV
ENVTDHLNVGDTVRVKVIEIDRXGRLRLSAKAIQEGE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaattagcaaaactttccaatacggctccaacaccgtcacacttgaacacggc
gaaatcgccaagcaggcgaccgccgccgtcatggtcaatatggatgacacctgtgtgctg
gtgtcggtcgtggggcagcgcactgttgaagtcgcccgtgatttctttccactgacggtt
gattatcaggaaaaattctacgccgccggacgcattccgggcggtttcttcaagcgtgaa
gcccgcgccaccgaagaggaaaccctgattgcgcgcctgatcgaccgcccactgcgtcca
ttattcccggatggcttcaccaacgaagtgcagatcatcgctctggtggtgtccatgaac
cctgccgttccggctgacatccctgccatgatcggcgcatccgccgcactggcgttgtcc
ggcatgccgttccagccgattggtgctgcgcgtgtcggctaccgtgaaggccaatacctg
ctgaacccttcagcggaagacctgaaaacgtccaaccttganctggtgatcgcaggcact
gaaagcgccgtgctgatggttgaatcggaagcccgcgagctgagtgaagaggtgatgctg
ggtgcggtcatgttcggccacgaacagatgcaggtcgccatcaaggcgatcaatgaaatg
gcggcggaagcgggggctgttgcatgggactggcaagcgccaacncctgacgcggccttg
caggcggcggtggcgggtgcatgtgaggccgacttgcgtgaagcgttccagatcaccgag
aagcagaaacgttatgcccgcatagacgaaatcctccaggccgcgctggaaaaactggcg
gcgaaggagggcgaggaaggcggcttcaaccctgagcagatcaagggcgaattcaagaac
gtcgaaaagaaagtggtgcgtggcaatatccttgacggcaagccgcgcattgacgggcgc
gacctgcaaaccgtgcgcccgatcagcgtgcgtctgggtgtgctgccgcgcgcccacggc
tccgccttgtttacccgtggcgaaacccaggcgctggttgtcaccacactgggcaccgag
cgcgatgcgcagattattgacgccatcacgggcgaatacaaagacccattcctgttcaac
tacaacttcccgccgtattccgttggcgaagtgggtcgtttcggcgcacccaaacgccgt
gaaatcggccatggccgcttggccaaacgcggcgtgaaatccatgttgcccaacatcgat
gatttcccgtatgtcatccgttgcgtgtcagaaatcaccgaatccaacggttccagctcc
atggcgagcgtgtgcggcagttcactggcgatgatggatgctggcgtcccgttgaaagcg
ccggttgctggcatcgccatgggattgatcaaagaggaagaccgctttgccgtcctgagc
gatattctcggcgacgaagaccacctcggcgatatggacttcaaggtggcgggttccgcc
aatggcgtcactgcgctgcaaatggacatcaagatcaacggcatcaccaaggaaatcatg
cagcaggcgttagtccgngcgaaagcnggccgtctgtatatcctcggcgaaatggccaag
ggcatcgaagcgccacgcgatgagatttcccagtacgcgccgcgttacgtcaccatgaag
atcaacccggaaaaaatccgcgaagtcattggcaagggcggcgaaaccatccgtggcatt
accgagaaaacaggttgcagcatcgacatcaatgatgaaggtttcatcaagatcgccgcg
gttgacgcgaaagcggcttatgaagcgcgcagcatgatcgaagccatcaccgccgaagtg
gagctgaacaagatttataccggcaaagttgcccgcattatggattttggcgcattcgtc
accatcctgccgggcaaggacggcttgctgcacatttcccagatcagcaacgaacgtgtt
gaaaatgtcaccgatcacctgaacgtgggtgacaccgtgcgtgtcaaggtgatcgagatt
gaccgtcanggccgtctgcgcctgagtgcgaaggcgattcaggaaggggaataa
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