Candidatus Thiothrix singaporensis: HZT40_07770
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Entry
HZT40_07770 CDS
T06729
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZT40_07770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
this03019
]
HZT40_07770
Enzymes [BR:
this01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZT40_07770
Messenger RNA biogenesis [BR:
this03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HZT40_07770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QLQ31506
UniProt:
A0A7L6AQY4
LinkDB
All DBs
Position
complement(1563498..1564838)
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AA seq
446 aa
AA seq
DB search
MSFSELGLAEPLLRAITAQGYATPTPIQQQGIPAVLTXRDLMAAAQTGTGKTAGFTLPML
HRLMAGKRPASNHIRALVLTPTRELAAQVGESVRDYGQHLPLTSAVVFGGVSINPQLMAM
RSGVDVLVATPXRLLDLYNQNAVKFSQVEILVLDEADRMLDMGFIRDIRKILDLLPKRRQ
NLLFSATFSNDIVALAKGLLHQPLQVSVTXRNTTAETVKQSVYLVEKASKTALLSHLIRA
NQWEQVLVFARTKHGANRLAHKLAXDGITAAAIHGDKSQGARTRALGDFKQNAIRVLVAT
DIAARGLDIEQLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVEPEEHAFLKGIEK
LIKQALPREQLPEITLAPRQPQAPKAAVDAGADKPGKPQHRPKKRRTRSQKNEARASAGL
PPVKRADGTAANKPRRRRPSKPQAVA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttccgaactcggcctggccgagccgctgctgcgcgccatcacagcgcagggc
tatgcaacgcccacccctatccaacaacaaggcatccccgccgttttgacgngccgcgac
ctgatggcggcggcgcaaaccggcaccggtaaaaccgctggcttcaccctgccgatgctg
catcggctgatggcgggcaagcgccccgcctccaaccatatccgcgcgctggtgctgacg
ccgacccgggaactggcggcgcaggtgggtgaaagtgtgcgtgattacggccagcacttg
ccgctgacttccgctgtcgtctttggcggcgtgagcatcaacccgcaactgatggcgatg
cgttccggcgtcgatgtgctggtggccacaccgngccgcctgctggatttgtataaccag
aacgccgtgaagttttcccaggtggaaatcctggtgctggacgaagccgaccggatgctg
gacatgggcttcatccgcgacatccgcaagattctggatttgctgccgaaacgccgccag
aacctgctgttttccgccaccttttccaatgacatcgtggcgctggcgaaaggtttgctg
caccaaccgttgcaggtttcggtcaccncccgcaatacgacggcggaaaccgtgaagcag
tcggtgtatctggtcgaaaaggccagcaagaccgcattgttgagccatttgatccgcgcc
aaccagtgggagcaggtgctggtgttcgcccgcaccaaacacggtgccaaccggctggcg
cacaaactggcgngggatggcatcaccgccgccgccatccatggcgacaaaagccagggc
gcgcgcacccgggcgctgggcgatttcaaacaaaatgccatccgtgtgctggtggcgacc
gacattgccgcccgtgggctggacattgagcaattgccgcatgtgatcaatttcgaactg
ccgaatgtgccggaagattacgtgcaccgcattggccgcactgggcgggcgggtgccagc
ggcgaggccatttcgctggtggagccggaagaacacgcgttcctgaaaggcattgaaaag
ctgatcaaacaagcgctgccgcgtgagcaactgccggaaattaccctggctccacgccag
ccacaggcacccaaagccgccgtggacgcaggtgccgacaagccgggcaaaccccagcat
cgcccgaaaaagcgccgcacccgttcacaaaagaatgaggcgcgggcgtcagccggtttg
ccgccagtcaagcgtgctgatggcaccgctgccaacaagccgcgccgccgtcgccccagc
aagccacaagcagtcgcctga
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