Candidatus Thiothrix singaporensis: HZT40_15515
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Entry
HZT40_15515 CDS
T06729
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZT40_15515 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
this03021
]
HZT40_15515 (rho)
03019 Messenger RNA biogenesis [BR:
this03019
]
HZT40_15515 (rho)
Transcription machinery [BR:
this03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HZT40_15515 (rho)
Messenger RNA biogenesis [BR:
this03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HZT40_15515 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QLQ32760
UniProt:
A0A7L6AUH3
LinkDB
All DBs
Position
complement(3079731..3080990)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELXKKSAAEVFEIXQALGIESISRTRKQDIIFALLKAHAQNGEDIYGDGVLEILQD
GFGFLRSQDSSYLAGADDIYVSPSQIRRFGLRTGDTIAGKIRPPKDNERYFALLKVDTIN
YEPPESARNKIAFENLTPLHPDKRMRMERGNGSREDITARVIDIVSPFGKGQRGLIIAPP
KAGKTIMLQNMAQSIASNYPECYLIVLLIDERPEEVTEMSRMVQGEVVSSTFDEPAARHV
QVAEMVIEXAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEVHLDRRISEKRVFPAINI
NRSGTRREELLTTQDELQTLWVLRKFLHGMDDLDAMELLFDKLSKTKTNNEFFDVMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtctgaattanaaaagaaatctgccgctgaggtcttcgagatacnncaggcg
ctgggtattgaaagcatctcccgaacccgcaaacaagacatcatttttgctctcctgaaa
gcgcacgcccaaaacggcgaggacatctatggtgatggtgtattggaaatccttcaggat
gggtttggtttcctgcgttcccaggattccagctatctggcgggagcggatgacatctat
gtttcgcccagtcagatccgtcgctttggcttgcgcactggcgacaccattgctggcaag
attcgcccgcccaaggataacgagcgttactttgccctgttgaaagttgacaccatcaac
tatgagccaccagaaagcgcccgcaacaagatcgcctttgaaaacctgacgccgctgcat
cctgacaagcgtatgcgcatggagcgtggcaacggtagccgtgaagacattaccgcccga
gtgattgatattgtgtcgccattcggtaaggggcagcgtggcctgattatcgcgccaccg
aaagccggtaagaccattatgttgcaaaacatggcgcagagcattgcttccaactatcct
gaatgctatttgatcgttttgctgattgatgagcgtccagaagaagtgacggaaatgtcg
cgcatggtgcaaggcgaagtggtttcctccacgtttgatgaacctgccgcccgtcatgtg
caggtggcggaaatggtgatcgaanaggccaaacgcttggtcgaacacaagcgtgatgtg
gttattttgctggattccattacccgcttggcacgcgcctacaataccgtggtgccatca
tccggcaaagtgctgacgggtggtgtggacgccaatgcgttgcatcgtcccaagcgattc
ttcggggcggcgcgtaatattgaagagggcgggagcctgactattattgcgactgcactg
attgataccggctctaaaatggacgaggttatctacgaagagttcaagggaactggcaat
atggaggtgcacttggatcgccgtatttccgagaagcgtgtgttccctgccatcaatatc
aaccgttcgggtacgcgtcgcgaagagctgctgactacgcaggacgaattgcagactttg
tgggtgctgcgcaaattcctgcatggcatggatgatctggatgcgatggaattgctgttt
gacaagctgtctaaaaccaagaccaataatgagtttttcgatgtgatgcggcggggttaa
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