Candidatus Thiothrix singaporensis: HZT40_19225
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Entry
HZT40_19225 CDS
T06729
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
this
Candidatus Thiothrix singaporensis
Brite
KEGG Orthology (KO) [BR:
this00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
this03016
]
HZT40_19225 (rnd)
Enzymes [BR:
this01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HZT40_19225 (rnd)
Transfer RNA biogenesis [BR:
this03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HZT40_19225 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QLQ33378
UniProt:
A0A7L6AWL1
LinkDB
All DBs
Position
complement(3801526..3802665)
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AA seq
379 aa
AA seq
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MFDYIDNNQKLADLLARLDHAPWITLDTEFIREKTYYPRLCLIQIGSADVLACIDPLQID
DLQPFLDWLNEPHRLKVLHAAWQDLEIFHYLSGKVPAPVXDTQIAAAVLGMGDQLGYARL
VEHLLGVSLDKSQSRTDWARRPLTSKQLEYAIDDVRHLRTAYLLLREQLEQLGRMKWLDK
PFQKLTDPASYAIDPRTIWQRVKGVQILKSRQLAILRELAAWREERALHRDIPRRWILSD
EILLDMAKMQPKNADAFNQIRGLSTEQIERNAAEWLACIQHGQSLPQEEWPQLPRRRKLD
DNMGVLADLLTALLNQVASENDISAQMIATRPQIEKMLEEGRTTVSDDWRGALVNDLFTE
VLTGAASLRVRNQRLVVEH
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgtttgactacatcgacaacaaccaaaaactggccgacctgcttgcccgcctcgaccac
gcgccatggattacgctcgacacggaattcatccgcgagaaaacctattatccccgcctg
tgcctgatccagatcggcagcgctgatgtcctcgcctgtattgacccgttgcaaattgac
gacttgcaaccgttcctcgactggctgaacgagccgcaccgcctgaaagtcctgcacgcc
gcgtggcaggatttggaaattttccactacctcagcggcaaggttccggcaccggttntt
gacacccaaatcgccgccgccgtactcggcatgggcgaccaattgggctatgcccggctg
gtggagcacttgctgggcgtgtcgctggacaaatcccagtcccgcaccgactgggcgcgc
cgcccgctgaccagcaagcagctggaatacgccattgatgatgtgcgccatctgcgcacc
gcctacctgctgttgcgggagcaactggaacaacttggccgtatgaaatggctggacaag
ccgttccagaagctgaccgaccctgccagttacgccattgatccacgcaccatctggcag
cgggtcaagggcgtgcaaatcctcaaatcccgccaactggcgatcttgcgcgaactggct
gcttggcgggaagaacgtgccttgcacagggacatcccgcggcgctggatactgtccgac
gaaatcctgctggacatggccaagatgcagcccaaaaacgccgacgccttcaaccagatt
cgcggcctcagcacggaacagattgagcgcaacgccgctgaatggctcgcctgcatccag
cacgggcaaagcctgccgcaggaggaatggccgcaactgccgcgccgccgcaagctggac
gacaatatgggcgtgctggccgacctgctgaccgccctgctcaatcaggtcgccagtgaa
aatgacatttccgcccaaatgatcgccacccgcccgcaaatcgaaaaaatgctggaggaa
gggcgcacgacggtatcggatgactggcgcggcgcgctggtcaacgacctgttcaccgaa
gtgttgaccggcgcggccagcttgcgcgtgcgcaatcagcggttggtggtggagcactaa
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