Candidatus Thiothrix singaporensis: HZT40_19280
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Entry
HZT40_19280 CDS
T06729
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
this
Candidatus Thiothrix singaporensis
Brite
KEGG Orthology (KO) [BR:
this00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
this03016
]
HZT40_19280
Enzymes [BR:
this01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HZT40_19280
Transfer RNA biogenesis [BR:
this03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HZT40_19280
Prokaryotic type
tRNA splicing ligases
HZT40_19280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLQ33387
UniProt:
A0A7L6AWP8
LinkDB
All DBs
Position
complement(3814993..3816195)
Genome browser
AA seq
400 aa
AA seq
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MPISFMLNKGKVPVKIFTADVDSASLTQLGNLSQLPFIHSHIAAMPDVHAGIGATVGSVI
PTRGAIIPAAVGVDIGCGMNAVRLSLKASDLPDNLYAIRSAIEQRVPVGFDEHQKPSTQG
ATLKNMEKHLDVITDKHPGLVKMVKNFHRTWGKQLGTLGSGNHFIELCIDESDDLWVMLH
SGSRGIGNAIGRYFIAKAKXDVGRELGQLPDKDLAYFTEGTQHFDDYVEAVSWAQDYALV
NRREMMRLVLDALQTSKHLPAFTTTREAINCHHNYVQQEKHFGAEVYVTRKGAISAQAGQ
LGIIPGSMGAKSYIVRGLGNAQSFCSCSHGAXRRMSRSEAKRRFNTRDLEAQTTGIECRK
DKGVVDEIPGAYKDIDVVMQNQTDLVEVVHTLKQVICVKG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcagttttatgctcaacaagggcaaggttccggtgaaaatttttaccgccgac
gtggacagcgcctccctcacgcaactgggaaacctgtcgcaactgcccttcattcacagc
cacattgccgcgatgcccgatgtgcatgcaggcattggcgcaaccgtgggttcggtgatc
cccacccgaggcgcgatcatcccggcggcggtcggggtggatattggctgcgggatgaac
gccgtgcgcctgtcgctcaaggccagtgatttgccggacaacttgtacgcgatacgcagc
gccatcgaacagcgcgtgccggtcggtttcgacgaacaccagaagccatccacgcagggc
gcaaccctgaaaaacatggaaaagcatctggacgtcatcaccgacaaacatcccggcctg
gtgaaaatggtgaaaaacttccaccgcacctggggcaaacagctcggtacgctgggcagc
ggcaaccatttcatcgagctatgcatcgacgaaagcgatgacctgtgggtgatgctgcac
tccggcagccgtggtatcggcaatgcgatcgggcgctatttcatcgcaaaggccaaanag
gatgtcggccgtgaacttggccagttgccggacaaggatctggcctacttcaccgagggg
acgcagcatttcgatgattacgtggaggcggtcagctgggcgcaggattacgccctggtc
aaccgccgcgaaatgatgcggctggtgctggatgcgctgcaaaccagcaagcacctgcct
gcgttcaccaccacgcgcgaggcgatcaactgtcaccacaactacgtgcaacaggaaaag
catttcggcgcggaagtgtacgtcacccgcaagggcgcgatcagcgcgcaggcagggcag
ctcggcatcattcccggcagcatgggggcgaaatcctacatcgtgcggggattggggaat
gcgcaatcgttctgctcctgttcccacggtgcgcnncgccgcatgagccgctccgaagcc
aaacggcgtttcaacacccgcgacctggaagcccagaccaccgggatcgaatgccgcaag
gacaagggtgtggtggatgaaattcccggtgcctacaaggacatcgacgtggtgatgcag
aaccaaaccgacctggtcgaggtcgtacatacgttgaaacaagtgatttgcgtgaaaggg
tga
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