Candidatus Thiothrix singaporensis: HZT40_20095
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Entry
HZT40_20095 CDS
T06729
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03420
Nucleotide excision repair
this03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HZT40_20095 (uvrD)
03430 Mismatch repair
HZT40_20095 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
this03400
]
HZT40_20095 (uvrD)
Enzymes [BR:
this01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HZT40_20095 (uvrD)
DNA repair and recombination proteins [BR:
this03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZT40_20095 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HZT40_20095 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QLQ33514
UniProt:
A0A7L6AWE0
LinkDB
All DBs
Position
3980163..3982367
Genome browser
AA seq
734 aa
AA seq
DB search
MDISPILXPLNTQQRLAVSSPPVPVLVLAGAGSGKTRVLVHRIAWLIDVEGVSPFSILAV
TFTNKAANEMRGRIQELLQVPSGGMWVGTFHGLAHRLLRLHWQAAKLPQTFQILDSEDQI
RMLKRVLKALELDETRFPPRQMAGFINARKDEGSRPQHIDDKGDFALRQLVRIYTAYEEA
CQRNGLVDFAELLLRSLELLRDNADLQQHYQNRFRHILVDEFQDTNALQYAWLRLVAGEH
NPVFAVGDDDQSIYGWRXGKIENIRNFTKHFLKCETIRLEQNYRSTANILQAANALIDNN
RGRLGKKLWTEGQEGERLQLYAAFNELDEARFVAGRIQKWVEQGGSRNDAAVLYRSNAQS
RVFETTFNENRIPYRVYGGLRFFERAEIKDALAYLRLTANRSDDASLERIINHPPRGIGE
RTVDILRTQARQDGKSLWESASAAADNGEFTPRAANSVMHFVHLINRMASDISGLPLKEQ
VEVVIDLAGLKPHFLAKEKGEQGQARVDNLNELVTAAHGYTYVQTEDMPDMDELSAFLSH
AALEAGEGQGEAGEDCVQMMTLHSAKGLEFPLVFLCGMEEGLFPHQMSADDPARLEEERR
LCYVGITRAEQELVLTYAEQRQLHGQTRFNPPSRFLRELPEELVEEVRPKVKTYQPTRHT
DGYRPAPQQPVPPRRSTAVNETGYAVGQRVRHTKFGEGVIVGAEGAGAHSRVQVNFRDAG
LKWLVLGYANLERL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggacatatcaccgatactcaancccctgaacacccagcaacggctggctgtctcttcc
ccgcctgtccctgtgctggtgttggcgggcgctggcagcggcaaaacccgtgtgctggtg
caccgcatcgcctggctgattgatgtggaaggcgtttcgcccttcagcatcctcgcggtc
actttcaccaacaaggccgccaacgaaatgcgcgggcgcatccaggaattgttgcaagtc
ccctccggcggcatgtgggtcggcactttccacggccttgcgcaccgcctgttgcgcctg
cactggcaggcggcgaaactgccgcagaccttccagatactcgattccgaagaccagatc
cgcatgctcaagcgcgtgctgaaggcgctggagctggatgaaacccgtttcccaccccgg
cagatggccgggttcatcaatgcgcgcaaggacgaaggttcgcgcccgcaacacatcgac
gacaagggtgatttcgccctgcgccaactggtgcggatttacaccgcttacgaagaagcc
tgccagcgtaacgggctggtcgatttcgccgaactgctgctgcgttcgctggaactgctg
cgcgacaacgccgatttgcaacagcattaccagaaccgtttccggcatatcctggtcgac
gaattccaggacaccaacgcgctgcaatatgcctggttgcggctggttgcgggcgagcac
aatccggtgtttgccgtcggtgatgacgaccagtcgatctacggctggcgcnngggtaag
attgaaaacatccgcaatttcaccaagcatttcctcaagtgcgaaaccatccggctggag
cagaattaccgttccaccgccaatatcctccaggccgccaacgccctgatcgacaacaac
cggggacgtttggggaaaaagctgtggacggagggtcaggaaggcgaacgcttgcaactc
tacgccgccttcaacgagctggacgaagcgcgtttcgtcgccgggcgcatccagaaatgg
gtggaacagggtggcagccgcaacgacgccgccgtgctgtaccgttccaacgcccagtcg
cgggtgtttgaaaccaccttcaacgaaaaccgcatcccttaccgcgtgtacggcggcctg
cgcttcttcgagcgggcggaaatcaaggatgcgctggcgtatctgcgcctcacggccaac
cgttccgatgacgcctcgctggagcgcatcatcaaccacccaccacgcggcatcggtgaa
cgcacggtcgacatcttgcgcacccaggcgcgccaggatggcaagtccttgtgggaatcc
gccagtgccgctgccgacaatggcgaatttaccccgcgtgccgccaactcggtgatgcac
ttcgtgcacctgatcaaccgcatggccagcgacatcagtggtctgccgctcaaggaacag
gtggaggtggtgattgacttggcaggtctgaagccgcatttcctcgccaaggaaaagggc
gaacagggtcaggcgcgcgtcgataacttgaacgaactggtcactgccgcgcacggctac
acctacgtgcaaaccgaagacatgccggacatggatgagctttccgcctttctttcccac
gccgcgctcgaagcgggtgaaggccagggcgaagcaggcgaggattgcgtgcagatgatg
acgctgcattcggccaaggggctggaatttccgttggtgttcctgtgcggaatggaggaa
ggcctgttcccgcaccagatgtccgctgatgacccggcgcgcctggaggaggaacgccgc
ctgtgctacgtcggcatcacccgcgccgaacaggaactggtgctgacctacgccgaacaa
cgccagctgcacgggcaaacccgcttcaacccgccgtcccgcttcctgcgcgaactgccg
gaggaactggtggaggaggtgcgcccgaaagtgaaaacctaccagccgacccggcacacg
gatggctaccggcctgcgccccagcagcctgtgccgccgcgccgcagcactgccgtcaat
gaaactggctacgccgtcgggcagcgggtgcggcacaccaagttcggcgagggcgtgatc
gtgggggcggaaggggctggcgcgcattcccgggtgcaggtcaatttccgcgatgccggt
ctgaaatggctggtgttgggctacgccaatcttgaacggctttaa
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