Candidatus Thiothrix singaporensis: HZT40_21120
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Entry
HZT40_21120 CDS
T06729
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
this
Candidatus Thiothrix singaporensis
Brite
KEGG Orthology (KO) [BR:
this00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
this03016
]
HZT40_21120
Enzymes [BR:
this01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HZT40_21120
Transfer RNA biogenesis [BR:
this03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HZT40_21120
Prokaryotic type
tRNA splicing ligases
HZT40_21120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
QLQ33694
UniProt:
A0A7L6AWY7
LinkDB
All DBs
Position
complement(4178879..4180102)
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AA seq
407 aa
AA seq
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MTITGNYEVLYEEGHAPVKAWTRGVTFDDNAKRQVLNMAQMPFIHKWVAIMPDVHLGKGA
TIGSVIPTIGAVIPAAVGVDLGCGMMAAKTTLTASDLPDSLELMRSAIEKTVPHGITFGG
RDKGSWGEPPADVLXKWLRLSEGFQRLCEKHPFLKNSNNLNQLGTLGTGNHFIEVCLDED
QAVWVMLHSGSRGIGNKIGSHFIAQAKKEMERWFIHLPDKDLAYFPEGSEHFRDYVEAVA
WAQDFAQANREVMMARTLQAIREVLPKTFSADVEAVNCHHNYIXPEHHYSKDVWVTRKGA
VSAKAGEMGIIPGSMGAKSYIVRGLGNAESFCSCSHGAGRVMSRTEAKRRVSMDEHIKAV
EGVECRKDSDVIDETPSAYKPIEAVMAAQNDLVEIVHTLKQVLCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaccattaccggcaactacgaagttttatacgaagaaggccacgccccggtcaaagcc
tggacacgcggcgtcacattcgacgacaacgccaaacgccaagtgctgaacatggcgcag
atgcccttcatccacaaatgggtggcgatcatgcccgatgtgcatctgggtaaaggcgcg
accattggcagcgtgatccccaccattggcgcggtgattccggcggcggtcggggttgac
ctcggctgcggcatgatggcggcgaaaaccacactgaccgcatccgacctgccggattca
ctggaactgatgcgtagcgcgattgaaaagaccgtgccgcacgggattacctttggcgga
cgtgataagggtagttggggcgaaccacccgctgatgtgctgngaaaatggctgcgcctg
agcgagggcttccaacgcttgtgcgaaaagcatccgttcctgaaaaacagtaataatctg
aatcagttggggacactggggactggcaaccatttcattgaagtgtgcctggacgaagat
caggccgtgtgggtgatgctgcatagcggttcgcgcgggatcggcaacaagatcggttcg
cacttcatcgcgcaggcgaaaaaggagatggaacgctggtttatccatctgccggataag
gatttggcctacttcccagaaggcagcgagcatttccgcgattacgtcgaagctgtcgcc
tgggcgcaggattttgcgcaggccaaccgcgaagtgatgatggcgcgcaccctgcaagcg
atccgtgaagtgttgccgaaaaccttttccgccgatgtggaagcggtcaactgccaccac
aactacatcnagccagaacaccactacagcaaagacgtgtgggtaacccgcaaaggcgcg
gtgagcgcgaaggcaggcgaaatgggcatcatccccggcagcatgggggcgaaatcctac
attgtgcgcggcctgggcaacgcggaaagcttttgcagttgcagccacggcgcaggccgc
gtgatgtcacgcaccgaagccaaacgccgcgtttcgatggatgagcacatcaaggccgtc
gaaggcgtggaatgccgcaaagatagtgatgtgattgatgaaacgccgtcagcctacaag
ccgatcgaagcggtgatggcagcgcagaatgatctggtggagattgtgcatacgctgaag
caagtgttgtgcgtgaaggggtga
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