Thiovibrio sp. Mzg5: MDB5_11150
Help
Entry
MDB5_11150 CDS
T11946
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thiv Thiovibrio sp. Mzg5
Pathway
thiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDB5_11150 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thiv03021
]
MDB5_11150 (rho)
03019 Messenger RNA biogenesis [BR:
thiv03019
]
MDB5_11150 (rho)
Transcription machinery [BR:
thiv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MDB5_11150 (rho)
Messenger RNA biogenesis [BR:
thiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MDB5_11150 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
Spore_III_AA
ATPase_2
AAA
AAA_25
S1CSD-TOTE-2
OB_RNB
DUF6115
ResIII
Motif
Other DBs
NCBI-ProteinID:
BCB93493
LinkDB
All DBs
Position
complement(1244844..1246103)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELKLMKITELTKLAKDYRIEEYSAMRKQELIFAILQAAGGQSEKNGENWGSGVLEV
LPDGFGFLRAPYYNYLPGPDDIYVSPSQIRRLNLRTGDTIEGPVRTPKEGERYFALLKVD
SVNFDPPEKARDKTLFSNLTPLHPQERIHLERESDNYSMRIMDIMSPIGKGQRGLIVAPP
RTGKTVLIKDIANSITKNHKEIILIVLLIDERPEEVTDMARGVDAEVISSTFDEPPQRHI
QVAEMVLDKARRLVEHKKDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHRPKRF
FGAARNIEEGGSLTILASALIETGSRMDEVIFEEFKGTGNMELVLDRKIADRRIFPAIDM
AKSGTRKEELLLTAEELNKVWILRKLLGSMNPIDAMEFFRDKMKGTRSNAEFFESMKGG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacttatctgaacttaaattgatgaaaatcaccgagctgaccaagctcgccaaggat
taccggattgaagaatacagcgccatgcgcaagcaggagctgattttcgccatcctgcag
gccgctggcgggcagtccgaaaaaaacggcgagaactggggcagcggcgtgcttgaggtg
ctgcccgatgggttcggttttctgcgggcgccgtattacaattatctgcctgggcctgat
gacatctatgtttccccttcccaaatccggcggcttaatcttcgcaccggtgataccatt
gagggtccggtccgtactcccaaggaaggtgagcgctattttgccctgctcaaggtggat
agtgtcaactttgatccgccggaaaaggcccgggacaaaactctgttttccaaccttacc
ccgttgcatccccaggagcgcatacatcttgaacgggagtcggacaattactccatgcga
atcatggacatcatgtcgcccattggcaagggccagcgcggcctgattgtcgccccgccc
agaaccggcaagaccgtgttgatcaaggatatcgccaacagcattaccaaaaaccacaaa
gagatcatcctcattgttctgctcatcgacgaacggcctgaggaagtcaccgacatggca
aggggtgtcgatgccgaggtgatcagttccaccttcgatgagccaccccagcggcatatc
caggtggccgagatggtcctcgacaaggcccgccgtctggtggagcacaagaaggatgtg
gttatcctgctggacagcattacccgtctggcccgggcttacaacacggtggtgccgccc
agcggtaagattctttccggcggtgttgattctaacgccctgcatcgcccgaagcggttt
tttggtgcggcgcggaatattgaagaggggggcagtctgaccattcttgcctcggccctg
atcgaaaccggtagccggatggatgaagttattttcgaggagttcaagggcaccggcaac
atggagcttgtcctcgaccggaagatcgcggaccggagaatatttcctgccatcgatatg
gccaaatccggaacccggaaggaagagctcttgcttacggcggaagagttgaacaaggtt
tggattttgcgcaaactcctgggttccatgaaccccatcgatgccatggagtttttccgg
gataagatgaagggaacccgctccaacgccgaattttttgagtccatgaaaggcggttga
DBGET
integrated database retrieval system
