Tarenaya hassleriana (spider flower): 104798343
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Entry
104798343 CDS
T04125
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104798343
03015 mRNA surveillance pathway
104798343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104798343
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104798343
5.6.2.5 RNA 5'-3' helicase
104798343
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104798343
mRNA cycle factors
Common to processing body (P body) and stress granule
104798343
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
ATPase
NPHP3_N
nSTAND3
SRP54
PhoH
AAA_16
AAA_22
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
104798343
NCBI-ProteinID:
XP_010518677
LinkDB
All DBs
Position
Unknown
AA seq
1249 aa
AA seq
DB search
MDSQQSNLFETASQPDTAADAYTFLEFNTQGDSEFDYPEFRSPTAWPTPSDSLSISDPSD
RGAGVTAGDHHSEASSHSPLSPPAPGSGAKGGRGGGGGGSSSSQVDALAAGMGNLNFEET
GDDDAFDYGKGNFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMN
WDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKSNPDATLEDLEKP
GVDDEPQSVQLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIA
FFVFPKEDNELRLVPGDELRLRYSGDAVHPAWQSVGHVIKLTAQEEVALELRPNLGVPID
VNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEAQMVRNTLPRRFG
APGSPELNASQVFAVKSVLQMPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPIEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREITQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQTSGIDFPWPVPNRPMFFYVQLGQEEISASGT
SYLNRTEAANVEKIVTTFLKSGVVPGQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYSDRRLFYGGGAGIIGNGNFGGV
NSGNPNADRRGGRGRAAGSYLPPGPANGVRPGLHPTGYPMPRVPLPPFPGGLPSQPYAIP
VRGPGNHGFGAGRGNPISSHLPHQQVSQQNVGTIGPSFNFSLESPNSQPSAGGPLTQPAY
VNNGSQIFRDEFSMGGISQDFLGDDVKSQGSHVPYNVADFSAQGSQGGYAVDYATQGAHG
AFAGNFLNQNSQDGCSRFGGGNDFMSQEYMAHGSQGLFTQAGFPNASQDNVQQNQYGVSN
PSHLQSQGVLNSLYSQPFSHYKMHPLNLSASQQSQPGQGSQNPKLPYDG
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacagagcaatctcttcgagacagcgtcgcagcccgacacggccgccgac
gcctacacctttttggaattcaatacgcagggcgactccgaattcgactacccggagttc
cgatcacctactgcgtggcctacgccgtctgattccctctccatctccgacccctcagat
cgcggcgccggagttactgctggagatcaccactccgaggcttcgtcgcattctccgctg
tctcctccggcgcctggaagtggcgcgaaggggggacgcggtggaggcggtggtggtagt
agcagcagccaggttgatgcattggcggcggggatggggaatttaaactttgaggagacc
ggcgatgatgacgctttcgattatggaaaagggaatttcacagagcacgcatgcaagtat
tgtggtatctcgaacccggcttgcgtggtgaggtgcaatgtggcatcttgtcggaagtgg
ttctgcaattcaaggggaaacacatctggctctcatattgtcaatcatctggttcgagca
aaacacaaggaagtttgtctccataaagacagcccgctcggggaaacaattcttgaatgc
tacaactgtgggtgtcgaaatgtcttcctcctcggcttcatttcagcaaagacagagagt
gttgttgttcttctttgtagagaaccttgtctaaatgtaaatgccctgaaggatatgaac
tgggatctaagtcaatggtgtcctctgatcgatgataggtgtttcctgccgtggcttgtg
aaggttccatctgaacaagaacagttgagggcacggcaaatcagtgcacagcaaataaac
aagatagaggaactatggaagagcaatcctgacgctactcttgaagatcttgaaaaacct
ggtgttgatgatgaaccccagtctgttcaattgaagtatgaagacgcgtatcagtatcaa
aatgtgttcgctcctcttatcaagcttgaagcagattatgacaaaatgatgaaagagtct
caaagcaaggacaatgtcacagttcgctgggatattggtcttaacaagaagcgtattgca
ttttttgtgttcccaaaggaggacaatgaattgcgtttagtgccaggtgatgaactccgg
ctgcgttattcaggagatgcagtgcatccagcatggcagtcagttggacatgtgatcaag
ctaaccgcccaagaggaggttgctcttgagctccggcccaatctgggagttccaattgat
gtgaaccatgggtttagcgttgattttgtttggaagagtacaagctttgaccggatgcag
ggagcaatgaaggcttttgcagtagatgaaacgagtgtgagtggctatatttaccaccac
ttgctgggacatgaagttgaggctcagatggtacgcaacacactacctcgtcgttttgga
gcacctggttctccggaactgaatgcttctcaggtttttgcggtgaagagtgtccttcaa
atgcctattagtctgattcaaggccctcctggtactggtaaaactgtgacttctgcggca
attgtgtatcacatggccaaacaaggccaaggacaggttcttgtttgtgcccccagtaat
gttgctgtagaccaactagctgaaaagataagtgctactggtctgaaggttgttcgacta
tgtgcaaaatcaagggaagctgtaagttctcccattgagcatttgacccttcactaccag
gtacgacatcttgacacatctgagaagagtgaactccataagctgcagcaattgaaagat
gaacaaggtgaactgtcgagtagtgatgagaagaaatacaaagcacttaaacgagctaca
gaacgtgagataacccagagtgctgatgtcatctgctgtacttgtgttggtgctggggat
cctcggttgtcaaattttagatttagacaggtccttattgacgagtctactcaagcaaca
gaacctgagtgtcttatccctttggttctcggtgcaaaacaggttgttcttgtcggcgat
cattgccagcttggtcctgttattatgtgtaagaaagcagctcgtgctggcttagcacag
tctctgtttgaacggcttgtgctgcttggtgttaaaccaattaggttacaggttcaatac
cgtatgcacccagctttgtctgagtttccttccaacagtttttatgaaggcacactacag
aatggagtcacaatcaatgaaaggcaaacatcagggattgactttccttggcctgtgccc
aatcgtcccatgtttttctatgttcagttgggacaagaggagatcagtgctagtggaaca
tcgtacctgaatcgaactgaggccgctaatgttgagaagattgtgaccactttcttaaag
agtggagtggttcctggccagattggagttataaccccatatgagggacagagagcgtac
attgttaattacatgtcaagaaatggtgctctcagacagcaactttacaaggaaattgag
gttgcgagtgttgattcttttcaagggagggaaaaagattacatcatattgtcctgtgtg
agaagcaatgaacatcagggcattggattccttaatgatcctcggaggctgaatgttgcc
cttacccgagctcgttatgggattgttattcttggaaaccctaaggttcttagcaaacaa
ccactgtggaatggcttgctgacacattacaaggaacatgagtgcttggttgagggacct
ctgaataatttgaaacagagcatggtgcaatttcagaaaccaagaaagatttacagtgac
cggagactgttttatggtggtggggctggaatcataggaaacggtaattttggtggtgtt
aactcgggtaaccctaatgctgacaggagaggtggtcgtggaagggctgctggatcttat
ctgcctcctggccctgctaacggtgttagacctggactccacccaactggatatccaatg
cctagggtaccacttccgccatttcctggtggtctgccttctcagccatacgccattcca
gtgcgtgggcctggaaatcacggttttggtgctgggcgtggaaatccaatcagcagtcac
cttcctcaccaacaagtgtcccagcaaaatgttgggactattggccctagttttaacttt
tctctggagagtccaaatagccagccttctgcgggtggaccactaactcaacctgcatac
gtaaataatggaagccagatcttcagagatgaattttctatgggcggcatatctcaggat
ttcttgggtgatgacgttaagagccagggatctcatgttccatacaatgtggctgacttt
tctgcgcagggctcacagggtggatatgctgttgattatgccacacaaggagcccatggg
gcatttgctgggaacttcctaaaccagaattctcaagatggttgttctcgttttggtgga
ggaaatgatttcatgtcccaggagtacatggcacatgggtcacaaggtctttttacccag
gctggctttcccaatgcctcacaggataatgtccagcagaatcaatatggtgtgagcaat
cctagccatcttcagtctcagggcgtgctaaattcactctactcacagcctttctcacac
tacaaaatgcacccactgaacctttctgcttcgcagcagtctcagcctggccagggctct
cagaatccgaaacttccctacgatggctga
DBGET
integrated database retrieval system
