Tarenaya hassleriana (spider flower): 104799125
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Entry
104799125 CDS
T04125
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104799125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104799125
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104799125
mRNA cycle factors
Common to processing body (P body) and stress granule
104799125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
104799125
NCBI-ProteinID:
XP_010519796
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MMIGQMDKTSDLSSRERAQSILDKTVKLESKRRKAAQARLPSDPNAWQQIRENYEAIILE
DHTFSEQHSIEYNLWQLHYKRIEEFRAHFNVLSSGSSNTAQNVKGPIRPDRVAKLRLQFK
TFLSEAAGFYHDLILKIRSKYGLPMGYFSEDPEKSAEVKKAFVSCHRCLIYLGDLARYKG
LYGEGDSKNREYAAASSYYLQAASLLPASGNPHHQLAIISSYSGDELAAVYRYFRSLAVE
SPFPTARDNLIVAFEKNRQNYTQLLMMVKDSSRKPNGKGRRKGEDLSLKDANLVVGPEKD
IIPNANEMLKTFCTRFVRLNGIIFTRTSLEMFSEVLDSTINSLQELLSSGPAEELNFGAD
VTDNAVFIVRLVAILIFSVHNSKKETASQTYAEIVQGAVLAKNSLTACFKLLGLVVDRCV
QLREPSSSYFLPGVLVFVEWLACYPDIAAGSDPDEKQIAVRSNFWNQCIAFLNRILSLGP
MLIDAEEDETCFSNMSRYDERETENRLALFEDCELRGFLPLLPAQAVLDFTRNHSFGSEG
PKEKKARIKRILAAGKALTSVIKIDQNPVYFDSKKKEFLVGVKPSDNFLLDSYPSLPDAN
NTLQDHQMIMDLNSSVMQQGHPYLDEEDEDEVIVFKPMVSEKRIGAPDQIYEPNVSIRKP
DQGASIGDLKSLGGSRSASHDNLLVQASASTSFQLPVSVVGSNLLAHLQPAQSQVQHLQQ
CQTQVMPQLPAQSQVGHLQPTQSQIAHFPLSHLQACKRLPEDAASLAGNLSGLNLIGNGH
MMNEMQGNHGISYHPAPSLPIHQSFNVNSISGVPYPQSRATEAVLMSKVDAVSSSGVIAD
GMGVHTSLTRKNPISRPVRHLGPPPGFNSIPSKAPKELMSSSDLSGSNPLVDDYRWLDGY
QPQSTRGVGLSNSLNYPLPGKSEYVSISNGLNGTVNFPFPGKQVPTSQVQADIQKGWQAY
QQLQQQQLVNGNQQSSAQLPEQYQGQSSWPGRSFV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgggcagatggataagacatctgatctttcgtcaagggagcgtgcacagtcc
atactcgataagactgtcaagttggaaagcaagcgtcggaaggctgcccaggctcgactt
ccatctgatccaaatgcgtggcagcaaattcgggagaattatgaagcgataattcttgag
gatcatactttttctgagcagcacagcatcgagtataatttatggcagttgcattacaaa
cgtattgaagagttcagagcacacttcaatgtcctgtcttctggcagctcaaatacagcc
caaaatgtcaaaggtcccatcagacctgaccgagttgcgaagctcagactgcagtttaaa
acattcctgtcagaagcagctgggttttaccatgatcttattttaaaaattaggtcaaaa
tatggtctccccatgggatatttctctgaggatccagagaagtcagcagaagttaagaaa
gcgttcgtgtcttgccaccggtgcttaatatacctgggtgaccttgcccggtataaagga
ttgtatggggagggggattctaagaacagggagtatgctgctgcttcaagttattacctg
caagctgcttccctattgccagccagcggaaacccacaccatcagcttgctataatatcc
tcttattcaggggatgagttggcggctgtttatcgttatttccggagtttggctgtggag
agcccctttcctactgcccgtgacaacttgattgttgcatttgaaaagaaccgtcagaat
tacactcagctgcttatgatggttaaggattcatctagaaagccaaatggtaaaggaaga
cgcaaaggggaagatctttcattgaaagatgcaaatttggtagttggtcctgagaaggat
ataataccaaatgcaaatgagatgctcaaaacattttgcactagatttgtccgccttaac
gggattatttttactcgtacaagcttggagatgttctctgaagttcttgactccactatc
aacagcttacaagagctgctttcttcaggcccagcggaggagttgaatttcggtgcagat
gtcactgacaatgcagttttcattgttagacttgtggcgattctgatattcagcgttcat
aattcaaagaaagaaacagcaagtcagacgtatgcagaaatcgtacagggtgctgtgctt
gccaaaaattccttaacagcatgcttcaagttacttggactagtagtagaccggtgtgtt
cagcttcgcgaaccttcatcaagttacttcttgcctggtgtcctagtctttgttgaatgg
ttggcatgttatcctgatattgcggcgggcagcgatccagatgagaagcagattgctgtt
cggtctaacttctggaaccagtgcattgccttcttgaatcgaatattgtcgcttgggccg
atgcttattgatgctgaggaagatgagacttgcttctcaaacatgagcagatatgatgaa
agggaaactgaaaaccgacttgcgctatttgaggactgtgaactaagaggattcttgcca
ttgcttcctgctcaagctgttcttgacttcaccaggaatcattcctttggaagtgaaggt
cccaaagaaaagaaagctcgtatcaagaggattttggcagcagggaaagctttgaccagt
gtgataaaaatagatcaaaatcctgtgtacttcgactcgaagaagaaggaatttctggtt
ggtgtaaaaccgtcagacaatttcttgcttgattcatatccaagcctgccagacgctaat
aacactctgcaagatcaccaaatgatcatggatctgaattcatcagtgatgcaacaaggt
cacccctacctggatgaggaggatgaggatgaagtaattgtttttaagcctatggtttct
gagaagagaataggtgcccctgatcaaatatatgagccaaatgtgagcataagaaaacct
gatcaaggtgcttcaattggggatctgaaatctttgggtggttctcgctcagcttctcat
gacaatctccttgtacaagccagtgccagcacgagtttccagttacctgtatctgttgtt
gggtctaaccttctggctcatcttcaacctgctcagtcgcaggttcagcatctgcaacag
tgtcaaacacaagtgatgcctcaactgccagcacaatcgcaggttggtcatcttcaacca
acccaatcacagattgcacactttccactatcccatttacaggcctgcaagcggttacca
gaggatgctgcttctcttgctggaaatctatcagggttaaatctcataggtaatggtcat
atgatgaatgagatgcaagggaatcatggcatttcttatcaccctgctccttcattgccg
attcaccagtccttcaatgtcaatagtataagtggtgtgccatatcctcaatcacgagct
actgaagctgtgctgatgtccaaagttgacgctgtttcatcttctggggttattgctgat
ggtatgggtgtccatacttctctaacgagaaaaaatccaatcagcaggcccgttaggcat
cttgggcctccgcctgggttcaactcaatcccttctaaggcgccaaaggagttgatgtct
agttcagatctgtctggcagtaatccgctggttgatgattataggtggttggacggatat
caacctcaatctaccagaggtgttgggctcagtaattctttgaattaccctcttcctggg
aaatctgaatatgtaagtatcagcaatggcctgaacgggactgtcaatttccccttccct
ggaaaacaagttccaacgtcgcaggttcaagcggatattcagaaagggtggcaggcttat
cagcaacttcagcaacagcaacttgtgaacggaaaccagcaatcatcagctcagctccct
gagcaatatcaaggacagtcaagctggcccggtcgttcctttgtgtga
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