Tarenaya hassleriana (spider flower): 104799232
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Entry
104799232 CDS
T04125
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104799232
09122 Translation
03013 Nucleocytoplasmic transport
104799232
03015 mRNA surveillance pathway
104799232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104799232
03041 Spliceosome [BR:
thj03041
]
104799232
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104799232
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104799232
Spliceosome [BR:
thj03041
]
Complex C
Other components
EJC/TREX
104799232
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104799232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104799232
NCBI-ProteinID:
XP_010519944
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MADTRDNEAYEEELLDYEEEDDKVPDSAGNKVNGENGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRVLA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVS
RAGELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggatactagagacaatgaagcctacgaggaggagcttctggactatgaggaagaa
gacgacaaggtccccgattctgccggaaacaaagttaatggcgagaacggaaaaaaaggt
tacgtgggaatacacagttctggattcagagacttccttttgaaaccggagcttctccga
gctattgttgactcaggatttgaacatccttctgaagtgcaacatgaatgcattccccaa
gctatcctaggcatggatgttatttgccaagcaaaatctggtatgggaaagactgccgtg
tttgtgctgtctactctgcagcagattgaacctactcctggtcaggttgctgcacttgtt
ctctgtcatacaagggagttagcttaccagatctgccatgagtttgagcgtttcagtact
tatttgcccgacatcaaggttgcggtgttctatggtggagtcaacgttaaaattcacaag
gacttgctgaagaatgaatgtcctcacattgttgttgggacacctggtcgagtgcttgct
cttgccagggacaaggatctttccttgaagaatgtgaggcattttatccttgatgaatgc
gacaaaatgctcgaatcacttgacatgcggagagatgtgcaagagattttcaagatgacg
ccacatgataagcaagtaatgatgttctcggcaacactcagcaaagagatacgcccggtc
tgcaagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgact
ctacatgggcttgtacagcactacatcaaactgagcgagatggagaaaaaccgcaagttg
aatgaccttcttgatgctttggacttcaatcaagttgtcatctttgtgaaaagtgtcagt
agagcaggggagctaaacaagttactggttgaatgcaatttcccttctatatgcattcac
tctggcatgtctcaggaagagaggttaactcgttacaagggcttcaaagaagggcacaag
agaattcttgtggcaacagacttggtggggagaggaatcgacattgagcgtgtgaacatc
gtcgtcaattatgacatgccagattctgcagatacttatctccatagggttggcagagct
ggtaggttcggcacgaagggtcttgccatcacatttgtctcttctgctgcagattctgac
gttcttaaccaggtgcaagagcggtttgaggttgatataaaggaacttcctgagcagatc
gatacatccacctacatgccttcatga
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