Tarenaya hassleriana (spider flower): 104800815
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Entry
104800815 CDS
T04125
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104800815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104800815
03012 Translation factors [BR:
thj03012
]
104800815
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104800815
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104800815
Translation factors [BR:
thj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104800815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
R3H
HA2_C
OB_NTP_bind
nSTAND3
Ank_5
ATPase
AAA_22
HA2_N
Ank_2
AAA_19
AAA_11
PhoH
Rad17
AAA_16
AAA_7
Sigma54_activat
NPHP3_N
Gp-FAR-1
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
104800815
NCBI-ProteinID:
XP_010522055
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MGKKKRDSGEPTRAETTRIWATKFLEDFRASPDEVYTFESHLSNQERGAIHQMCQKMGLY
SKSSGVGDQRRISIYKHKIPKGKSKNSKKKEDNKPKISFSPEAKAILQELFMHHPPCEED
AEETSFEKYIEKSGRGCSWKDDFFSKPQMNREELAKKVASLATRVEKDTRLQQIAEKRSK
LPIASFRDAITSAVESNQIVLISGETGCGKTTQVPQYLLDHMWSKGEACKIICTQPRRIS
AISVSERISCERGESIGHDIGFKVRLQTRGGRHSSVVFCTNGILLRVLVGQGSGSCVSNI
THIIVDEIHERDCFSDFMLAILRDMLPTKPHLRLILMSATLDAGRFSEYFGGCPVIRVPG
FTYPVRTFYLEDVLSILKSGETNHLDSVNLNTLEDKHDITDADKIALDEAMDLAWLNDEY
DALLDLVSPAGTSKIYNYQHSSTWLTPLMVFAGKGRVSDVCMLLSFGADWSLKSKDGLTA
LKLAERENQLEAAQIIREYAQNSKSQQGEQLLDNYMATANPEQVDVGLITRLLRKICGDS
EDGAILVFLPGWDDINKMREKLLDKPFFAARNKFSIICLHSLIPAEEQRKVFERPPPGCR
KIVLATNIAESAITIDDVVYVVDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQREGRAGR
CQPGICYHLYSSVRASSLPEFSVPEIRRMPIEEVCLQVKMLDPNCKIHHFLQKLMDPPVS
ESIGNALTVLQDIGAFTPEEELTEFGERIGRLPIHPVICKMLFFAVLVNCLDPALTLACA
SDYKDPFTLPMCPTLKKKADDAKVEFASLYGGDSDHLAVVAAYEGWKEAKQSHQEAKFCS
EHFVSMNAMRMLDGMRKQLKSELVRHGLIPQDVSSCSLNSHDPGILRAVLVVGLYPMVGK
WLPPSANSKKPVVETASGAKVRLSSRSIAFKTLSDKGDGCTLLVYDEITRGDWGMHIRNS
TAVCPLPLVLFSTEIAVAPAETLGNGDHGEVVEGGGNMVEEDGMDIDKGGSNHGEKIMSS
PDNFVTMVVDRWLSFKTTALEAAQIYILRQRVSASILLKVRQPQEDLPPHLGASMYAISC
LLSYDGIRQSVGPLTSMADETVNGCTRKGRGKKQKGKR
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagaaacgtgattccggggaacctactcgtgccgaaacaaccaggatttgg
gctaccaagttcctcgaagattttcgcgcctcccccgatgaagtttataccttcgagtct
catctttcgaatcaagaacgtggtgcaattcatcagatgtgccagaaaatgggtttgtac
tcgaaaagttccggggttggggatcaaaggcgtatttccatttacaaacataaaattccc
aagggaaagtctaaaaactctaagaagaaggaagataacaaaccgaagatttcattttca
ccagaggcaaaagctattctgcaggagttatttatgcatcacccaccttgtgaggaagat
gctgaagagacatcatttgaaaaatatattgaaaagtcaggtagagggtgctcatggaaa
gatgactttttcagtaaacctcagatgaacagagaagaattagcaaaaaaagtggcatcc
ttagctactagagtagaaaaggatacgaggcttcagcagatagctgaaaagcggtcaaag
cttccaatagcatctttccgtgatgccattacatctgctgtggaatccaatcagattgtt
ctcatttctggtgaaactggatgcgggaaaactactcaggtacctcaataccttttagac
catatgtggagcaagggggaagcttgcaaaattatttgcactcaacctcgccgtatctca
gccatatctgtttctgagagaatatcatgcgaaagaggtgaaagtataggacacgatatt
ggcttcaaggttcggctgcaaaccaggggtggaaggcattcatcagttgtgttttgcacg
aatggcattctgttgagggtgcttgttggccaaggttctggcagttgtgtgtccaacata
actcacatcattgtggatgaaatccatgaaagggattgcttctctgatttcatgttggca
attttgagggacatgcttccaacaaaacctcatctccgactgattttaatgagtgctacc
cttgatgctgggagattttctgaatattttggaggttgccctgttattcgtgttcctgga
ttcacttatccggtgagaacgttttatctagaggatgttctctctattctgaaatcaggg
gaaaccaatcatcttgactcggtcaacttgaatacattagaagacaaacatgatatcaca
gatgcagataaaattgctttggatgaagcaatggatttggcttggttgaatgatgagtat
gatgcgctgctagatctagtttctcctgcgggaactagcaaaatttacaattaccagcac
tcatcaacctggctaacaccactaatggtctttgctggaaagggcagggtcagtgatgtc
tgcatgctcctctcatttggtgcagattggagtctgaagtctaaagatggtttaacagca
ttaaaattggctgaaagggaaaatcagcttgaagctgctcaaataataagagaatatgct
caaaattccaagtcacagcaaggagagcagttgcttgataattatatggcgactgcgaac
ccagagcaggttgatgtgggtcttataacgcgtttgttgagaaaaatatgtggtgattca
gaagatggggccattcttgtttttctacctgggtgggatgatataaacaaaatgagagag
aaacttcttgataaacctttctttgcagcaaggaataaattcagcattatatgtcttcac
tcgttgattccagcagaagagcagaggaaagtttttgaacgccctcctccaggatgtcgc
aagattgtgcttgctaccaatattgctgaatcagccattacaattgatgatgtggtttat
gtcgtagatagtggccggatgaaggaaaagagctacgacccttacaataatgtgtcaaca
ctccaatcttcatgggtctctaaagcaaatgcaaaacagcgagagggtcgagcaggccgc
tgccaacctggcatttgttatcatctctattccagtgtccgagcatcctctttgccagaa
ttcagcgttcctgaaattaggaggatgccaatagaagaagtctgcttacaggtcaagatg
cttgatccaaattgtaaaatacatcatttccttcaaaaattgatggacccacctgtttct
gagagtattggaaatgcattaaccgtccttcaagacattggggccttcacacctgaggaa
gagctgacagagtttggggagagaattggccgtctcccaatccaccctgtgatatgcaag
atgcttttcttcgctgtactagtaaactgtctggatccagctcttactcttgcatgtgcc
tctgactacaaggatccgttcaccttgcccatgtgtccaactctaaagaagaaagctgat
gacgcgaaagttgagtttgcatcactctatggaggtgatagtgatcacctagcggtcgtt
gccgcctatgaggggtggaaagaagcaaaacaaagtcatcaagaggcaaaattctgctct
gagcactttgtttccatgaatgccatgaggatgttggatggaatgcggaaacaactcaag
tcggaacttgttagacatgggcttattcctcaagatgtatcaagttgtagcttgaattcg
catgatcctggaatactccgagctgttctagtggtgggtttgtaccctatggtaggaaaa
tggttgccaccttccgcgaatagtaaaaaacctgtcgtggagactgctagtggagccaaa
gttcgtctgtcttctcgttcgattgctttcaagacattgtccgacaagggtgatggttgt
acgctgcttgtttacgatgagatcacccgtggggattggggtatgcacataaggaactcc
actgccgtttgccctctcccattggttctattctcgacagagatagccgtagcacctgca
gaaaccctcggcaatggagatcatggagaagtggttgaaggaggaggtaacatggttgaa
gaagatggaatggacatagataaaggaggcagtaatcatggagagaaaatcatgtcttcg
cctgataattttgtaactatggtggtggaccggtggttgtctttcaaaacaacagccctt
gaagctgctcaaatctacatcttgagacagcgagtatccgcgtctattttgctcaaggta
agacaaccgcaggaggatttgccgcctcatcttggagcatcaatgtacgcaatatcttgt
ctactttcctatgatggcataaggcagtcagtgggaccactgacttcaatggcggatgaa
accgtgaatggttgcaccagaaaaggcagaggaaagaagcagaaagggaaacgataa
DBGET
integrated database retrieval system
