Tarenaya hassleriana (spider flower): 104801312
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Entry
104801312 CDS
T04125
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104801312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
thj03041
]
104801312
03009 Ribosome biogenesis [BR:
thj03009
]
104801312
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104801312
Spliceosome [BR:
thj03041
]
Complex A
U2 snRNP components
U2 related factors
104801312
Complex B
104801312
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104801312
Ribosome biogenesis [BR:
thj03009
]
Eukaryotic type
90S particles
Helicases
104801312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
T2SSE
AAA_7
AAA_30
TsaE
UvrD-helicase
PhoH
NACHT
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
104801312
NCBI-ProteinID:
XP_010522836
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDEPSVKMAKPNGGDVGSSLINKWTGRPYTPKYFEILEKRKTLPVW
QQKEEFLQVLNANQTIILVGETGSGKTTQIPQFVLDAVNVETADKRRKWLVGCTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSGARTVLKYLTDGMLLREAMADPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINREVSNIGD
QVGPVKVVPLYSTLPPAMQQKIFESAPPPSTEDGPPGRKIVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYNPRIRVESLLVSPISQASAHQRSGRAGRTRPGKCFRLYTEKSFQNDLQAQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK
LGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSISAMLSIPNCFVRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNSEDPNWCYENFINNRALKSADNVRQQLVRIMARYNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIKGEWLVDVAPHYYDLTNFPNCEAKRVLEKLYKKREREKEESRNK
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccgagagaaagaggaaggtgagcctgttcgatgttgtggatgagccatcggtg
aagatggcgaaaccgaacggcggcgatgtcggaagcagtttgataaacaagtggacgggt
aggccatacactccgaagtactttgagattctggagaagaggaagacattgccggtttgg
cagcagaaagaggagttcctgcaggttctcaatgccaatcagacgattatcctcgtcggt
gaaaccggaagtggtaaaactacccagatcccccagttcgttttggatgctgttaatgtg
gaaactgcggataaacggaggaaatggctagttggatgcacccaaccacgtagggtggct
gcaatgtctgtttctagacgtgtggcggaagagatggatgtcactatcggtgaagaggtt
ggttatagcatccgttttgaggactgcagtggcgcaagaaccgttttgaagtatcttaca
gatggtatgcttttgagagaagcaatggcagacccacttttggaacgttacaaggtaatt
attcttgatgaggcccatgagaggaccttggctacagatgttctgtttggtttgctgaaa
gaggtgctgaaaaatagaccggatctcaaactagtcgtcatgagtgctactctcgaggct
gaaaagttccaagaatatttcagtggagcacctctgatgaaggttcctggtaggctacat
ccggtcgagattttctatacccaagaacctgaaagggactacttggaagcagccattcga
actgttgtgcagattcatatgtgtgagcctcctggtgacattcttgtcttcctaaccggg
gaagaggagatagaggatgcctgcagaaaaataaatagagaagtttcaaacattggggac
caggtcggacctgttaaagttgtgcctctttactctacgcttcctccagctatgcagcaa
aagattttcgaatctgcccctcctccctcgacagaagatggtcctcctggtagaaaaatt
gtggtttctacgaacattgccgaaacttctctgactattgatgggattgtgtatgttatt
gatccgggattttcaaaacaaaaggtttacaatccaagaatccgtgtcgagtcactactg
gtatccccgatatctcaagcgagtgcacaccagagatctggtcgtgctggaagaacccga
ccggggaaatgtttcaggctttacacagaaaaaagtttccaaaatgatcttcaggcacag
acctacccagaaatattgcgatcaaatcttgcgaatacagtgctgactctgaaaaagctg
gggatagatgatctggtgcattttgattttatggaccctcctgcaccggagacgctgatg
cgagcattagaggtgctgaattacttgggagcattggatgacgaagggaacttgacaaag
ctgggtgagataatgagtgaatttcccttggacccgcagatggcaaagatgcttattgtc
agccctgaattcaactgttcaaatgagattctatcgatatcagcaatgttgtcaataccc
aattgctttgtccgccctagggaggcccaaaaagctgcagatgaggcaaaagctaggttt
ggacacattgatggagaccacctcacccttttgaacgtctaccatgcatacaagcaaaac
agtgaagatccaaactggtgctacgagaattttatcaacaacagagccttgaaatctgcc
gataatgtgaggcaacagctagtgcggatcatggccagatataacttgaagctctgcagc
actgacttcaacagccgagactactatgtgaacataagaaaagccatgcttgcgggatac
ttcatgcaggtggctcatcttgaacggactggtcattatctgacagttaaagacaaccaa
gtggtccacttgcatccatctaattgcttagatcataaaccagagtgggttatctacaac
gagtatgtgttgactagcaggaattttatccgcacagtgactgatatcaagggagaatgg
ctggtagatgtagccccacactattacgatctaacaaatttcccaaactgtgaggcaaaa
cgagttcttgagaaactgtacaagaagcgggagagagaaaaagaggaaagcagaaacaag
agatga
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