Tarenaya hassleriana (spider flower): 104801485
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Entry
104801485 CDS
T04125
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104801485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104801485
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104801485
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104801485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
104801485
NCBI-ProteinID:
XP_019056501
LinkDB
All DBs
Position
Unknown
AA seq
2392 aa
AA seq
DB search
MLGPPSTIVSHVRFLLENLDDSDLDSSVHELCDFVDHGVETSVPVVLTCLGWLTFNKSPA
NRLQLEKAVSSVFKHAMKTPNFSTILSHTLKDVDVTEDFVVDLSNALRLSTSEKIVFALA
LSDLERSDARMSGRNFCVAEIEKLCVNLFQMESTEQIQNIILFLRKSEDLSKHLNSFFRI
LSSAQSREELHFVLTPFLSEDVHGADIFRGTHSLNDTAVNDFNAILAEIEKEISVGDLVE
ELGYGLTADATQCKEILSHFLPLTEATISRIFGTVARTFVGLEDNQNTFSTFSRALGFCS
SIELPLLKSWNVEILVETIKQLAPGTNWVQVIENLDYDEFYIPNMEAFSFFMLLFRNACK
DPFPLDVICSSVWKNVEGQLSFLKHAISSQPEVFSFVHTARKLAYVDDVHSHEQQLVLAN
NAWLSLDLLRVLCELAERGHAAIIRSLLQYPLTHCPRTLLLGMGHIKTACNLIQRDVASA
VLPMIVKNIPDSGFILDLWHLNAELVLWGILDAQTLEPDGLMRLVEICHELKILSFVLES
VPISHGIGLAVLASQRGFLDFEKWSFSCIYMYKDVFFEECLKFIRDIQFGESKGLSSRPF
HPSGTIFDLYLDAASSFLKVLKANASVVSSPHLSEEIEKVHAAILDSNTELQNGGAKDSS
ASAAVGDDVEAEANAYFHQMFSGQLSVDAMVQMLAQYKDSPVKREKAIFECMIGNLFEEY
RFFPKYPERQLKIAAILVGSVIKHQLITSITLGIALRGVLDALRKPADSKLFLFGTKALE
QFVIRLIELPQYCNHILQISHLRSTHPELVSVIEEALVRISSGISESDASVNHPISLQSI
PGSDELSGSGIGQSVLQFSSSIQLQHRNAVSVDDHNKVPAMPSNDVKSLLPSSATTSGDA
SVIQKNSVTGLAASSTSAGFVHSSRGATSTRFGSALNIETLVTAAERREKPIEAAPSEVQ
DKISFIINNISAANMESKAKDFAEILCQQYYPWFARYMVMKRVSIEPNFHDLYLKFLDKV
NSKVLYKEIVQASYENCKVLLGSELIKSSSEESTRSLSHFIVTELDFSSSLQAYEKGLMI
AVIPFTSKVLEPCRNSLAYQPPNPWTMGILGLLTEIYAMPNLKMNLKFDIEVLLKNLGVD
MKDVAPTSLLKDRKRDTDGNPDFSSKDLFVAQISQPQMIPEAKPGAISTLNQVELPFDVA
TSPNTGGHSKLSSQYAVPLRISTGTLMVDEKVAALSLSDQLPSAQGLIQSTPPPSAFSIS
QQLSAAIPNIGNHVVINQKLSTYGLHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTT
KELVLKDYALEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRISISSHLLNTLQGLNISN
EVLEQIVQLVTNDNLDLGCAAIEQAATEKAIQTIDADIAQQLLLRRKHRDGVGSFFDPKP
LPQNSVSVIPESLCPKPGHLSLCQQRVYEDFVQLPWQKQSTQSSHGLSGGSSSSGDVGLG
GDCGSLSGKQVSGFSSSAGNGGLDLVSRSSDIAAEGFEFSSVAPLSAPDTQVGPASDAAT
LLYSKSLSTSELHPTESSDATMKDTGAPSQTLTLTSSATMERLGSSITQPSLSTRDALDK
YQIVSQKLEDLVAASNTGDVEIQAVVSEVPEIILRCVSRDEAALAVAQKAFKALYENASS
GLHVSANLGILAAIRDVCKRVVKELTSWVIYSDEERKLNKDITLGLIRSELLSLAEYNVH
MAKHLDGGRNKSATDFAISLLQSLVTEESSVISELHSVVDALAKLAAKPGSPESLQQLIG
MIRNPVTSAASLSSAANSNENNARQSKDEKVASNTTTARDENIIMEPAEPDPAGFRGQVS
LLFNNWYKICELPGANDAACIRYVIQLHQSGLLKGDDLTESFFRILTELSVNHCISSEVI
NSAALQSPQQPQSLSFLAIDIYAKLVFSIFKNFPEHESSSKYFLLTKILAVTVRSIQKDA
EEKKTSFNPRPYFRLFINWLLDLCSLDLAANGSSFQILTAFANAFHALQPFKVPAFSLAW
LELVSHRSFMPKLLNLNNQKGWSYVQNLLVDLLQFLEPFLRNAELGGPVHVLYKGTLRVL
LVLLHDFPEFLCEYHFSFCDVIPSSCIQLRNIILSSFPRNMRLPDPSTPNLKIDLLPEIA
DSPRILSEVDAALKAKQMKNEVDEYIMMRQQNSPFLNELKQGVLLPTSEASLAGTRYNVP
LINSLVLYVGMQAIQQLQAGASQAQSNANVAALQIYKCLSSELDAEGRYLFLNAIANQLR
YPNNHTHYFSFIMLYLFLELDQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIRNRRY
NFWKQGFIRCAPEIEKLFHSVARSCGGGGGLKPVDEGMVSGWVSDNAPVSHI
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgttggggcctccgtccacgatcgtcagtcatgtccggttcttgctggagaacttggac
gattcggaccttgactcctccgtccatgagctctgtgactttgttgatcatggagttgag
actagtgttccggttgtcctgacctgcttaggctggttgacctttaataaaagccccgcg
aataggttgcagctcgagaaagcggtatcatcggtttttaaacatgcgatgaagacgcca
aatttcagtaccattctttctcacacgctaaaagatgttgatgtcactgaagattttgtg
gttgatttgtcaaatgcattgcgcttatctacatctgagaaaattgtctttgctcttgcc
ttgtccgatcttgaaagatcagatgcaagaatgagtgggcggaacttctgtgttgctgag
attgagaagctatgtgtcaatcttttccagatggagtcaactgagcaaattcaaaatatc
attttgtttcttcggaaatctgaggatctctccaaacatttgaattccttttttcggata
ttgtcttctgctcagtcaagagaagaactccacttcgtgctaactcctttcctttcagaa
gatgtgcatggagcagatattttcaggggcacacattcactcaatgatactgcagtaaat
gactttaatgctatcttagctgaaattgaaaaggagatcagcgtgggagatctcgtagaa
gaactaggttatggactcaccgctgatgccacacaatgcaaagagatcttgtctcacttc
ttacctttaacagaggctacaatctctagaatctttggaacggtggcccgtacctttgtt
ggtcttgaagataaccagaataccttttctacatttagtagggcccttggtttctgttcc
tcaattgaacttcccctgctaaagtcgtggaatgtagagattcttgttgaaacaatcaag
cagcttgctcctggcactaactgggtacaagtcattgagaatctggattatgatgaattt
tacatccctaatatggaggctttctcattcttcatgttgttgtttagaaatgcatgcaag
gatccatttccacttgatgtcatatgcagttctgtctggaaaaatgtggaggggcaatta
tcatttcttaagcatgctatatcttcacagccggaagtattttcctttgtgcatactgcg
aggaagctggcgtatgttgatgacgtgcacagccatgaacagcaactagtacttgccaat
aatgcttggttatctcttgacctgttacgtgtactctgcgaactggctgagaggggacat
gctgctataatccgttcattgcttcagtatccgcttacacattgtcccagaacgttgctt
ctaggaatgggtcatatcaaaactgcatgtaatctcattcagcgtgatgtggcttctgct
gttcttcccatgatagtaaagaatataccggatagtggttttatacttgatctgtggcat
ctgaatgctgaacttgttctttgggggattttagatgctcaaactctcgaaccagatggg
ttgatgagattagtggaaatctgccacgaactgaagattctctcatttgttttagagtca
gttccaatctcacatggcattggattggcagtccttgcttcacagagaggtttcttggac
tttgagaagtggtcgttcagctgtatatatatgtacaaggatgttttctttgaggagtgc
ctcaaatttatcagggatattcaatttggtgaatccaagggtctttcttccagacctttc
catccctctggtactatattcgatctatatctggatgcggcatcttcctttttgaaggtt
cttaaagctaatgctagcgtagtttcttcacctcatttgtctgaagaaatagaaaaggtc
catgcagcaattttggatagtaatacagaactgcagaatggtggggccaaagattcatca
gcttctgctgcagttggggatgatgtcgaggcagaagcaaatgcttatttccatcaaatg
ttttccggccagttgagtgttgatgcaatggtccaaatgcttgctcaatataaggactca
ccagttaaaagggaaaaagcaatttttgaatgcatgattggaaatctgtttgaggaatat
cgttttttccccaagtatcccgagagacagctaaaaatagcagccatcctcgttggttcg
gttatcaagcaccagcttataacttctatcactcttggtatcgcccttcgaggagtactg
gatgcattgcgtaaacctgcggattcaaaactgtttttgtttggaacgaaagctctggag
cagttcgtgatccgtctcattgagttgcctcagtactgcaaccatattttgcaaatatct
catctgcgtagtactcatccggaattagtttctgttatcgaggaagcccttgtgcggata
tcttctggtatttcagaatcagatgcctctgttaatcaccctatctccctacagtctatc
cctggaagtgacgagttgagtggttctggaattggccaatctgtattgcagttttcttct
tcaattcagcttcaacatagaaatgccgtttctgtagatgaccataacaaggtgcctgct
atgccttctaatgatgtgaagtcgcttctaccatcttcagcgactacttcaggagatgct
tcagtcattcagaagaattcagtgactggtctagctgcctcatcaacctcagctggcttt
gtccattcatctcgtggagccacttcgacaaggtttggttctgccttgaacatagaaacc
ctagtcaccgcagcagaaagacgagagaaaccaatagaggctgctccttcagaggttcag
gacaaaatatcttttataattaataatatctcagcagcgaacatggaatctaaagcaaaa
gatttcgcagaaatattgtgtcagcagtattatccctggtttgcacggtatatggtgatg
aaaagagtgagcatcgagccaaattttcatgacttgtacttgaaatttctggataaagtt
aattccaaggtcttgtacaaggaaattgttcaagcttcctatgagaactgcaaggttctc
ttaggctcagaactcataaagtcaagttcagaagagtcgacacggtctttgtcacacttc
atagttactgaacttgatttttcctcttctttgcaggcatatgaaaaggggttgatgatc
gcagtcattccattcacttctaaggtgttggagccctgccggaacagtcttgcatatcaa
cctccaaacccatggacgatgggtattcttgggctgcttactgagatctatgcgatgcca
aatctgaaaatgaatcttaaatttgacatagaggtgttattaaaaaaccttggtgttgat
atgaaagatgtagcaccaacttctctattgaaggaccggaagagagacacagatggtaat
cctgatttcagtagcaaggatctcttcgtggcacaaatatctcagccacaaatgattcct
gaagctaaacctggagcaatttctactctcaaccaggtagaactaccttttgatgttgca
acttcacctaacacaggtggccattcgaagttatcatctcagtatgcagtccctcttcgg
atttctactggtactttgatggttgatgagaaagtggctgcactaagcttatctgatcag
cttccctcggcccaaggattgatccagtcaactccgcccccttcagcattttctattagt
cagcagctctcagcagcaatcccgaatattggaaatcatgttgttatcaatcagaagtta
agcacatatggtctccactttccttttcagagagtggtaccccttgctatggacagagct
atcaaggagattgtgtctggtattgttcagcgtagtgtttgtattgcatgccaaactacg
aaagagcttgttttgaaggattatgccttggaaccagatgagacgcgtatatacaatgca
gctcatttgatggttgctagtttagctgggagtttggctcatgtgacttgcaaggaacct
ttgcgcatttcgatatcaagtcatctattgaatacgcttcagggtctaaatatttcaaat
gaagtcctagaacaaattgtgcaacttgtcactaatgacaatcttgaccttggttgtgct
gccattgaacaagcagctacagagaaggcaatacaaactattgatgctgacattgctcaa
caattgttgttaaggaggaagcatagggatggtgtcggttccttttttgatccaaagcca
ttgcctcaaaattctgtcagtgttattcctgaatctctctgcccaaaacctggtcatctg
tccctttgtcagcagcgggtgtatgaggacttcgttcagcttccgtggcaaaaacagtct
acccaaagttcacatgggttatctggtggttctagttcatctggagatgttggccttggt
ggtgattgtggttcactgtcaggaaaacaagtttctggcttttcatctagtgcgggaaat
gggggtctggatctggtttctcgatcatcggatattgctgcggagggttttgaatttagt
tcagttgcacctctgagtgcccctgacactcaagttggtccagctagcgatgcagccact
cttctgtattctaagtctctttcaacctctgagttgcatccaacagaatcttctgatgca
actatgaaagatacgggagcgccctcacagactttgacgttaacttcatctgctaccatg
gagcgacttggtagtagcattacacaaccttcgttgtccacgagagatgcattggataag
taccaaatagtttctcagaagttggaggacctagtagcggccagtaatactggagatgtt
gaaattcaggcagtagtttctgaggttcctgagatcatcctcagatgtgtaagcagggat
gaagctgcgttggctgtcgctcagaaagctttcaaggctctttatgagaatgcatcaagt
ggccttcatgttagtgctaacctaggaattctcgcagctatccgtgatgtctgcaaacgt
gttgtcaaggagctcacaagttgggtaatatattcagatgaggagcggaagctcaacaaa
gatattactcttggtcttatccgaagtgaattacttagcctggcagagtacaatgtccac
atggcaaaacatcttgatggagggcgaaataagagcgcaactgactttgccatctctctt
ctccaatccttggttactgaggagtcaagcgtcatttcggagctccatagtgttgttgat
gcactcgcaaagcttgctgcaaaacctgggtctccagagtcattgcaacagctgattggc
atgatacgaaatccagttaccagtgctgctagtctatctagtgctgcaaacagcaatgag
aacaatgctagacaatcaaaagatgagaaggtggcaagcaataccaccactgccagagat
gaaaatattatcatggaacctgcggaaccagatcccgctggtttccggggacaggtgtcc
ttgctttttaacaattggtataagatatgcgaacttcctggtgcaaatgatgcagcttgc
attcgatatgtcatacaattgcatcagagtggactgctaaagggggatgacctaactgag
agttttttccgcatccttacggaactttctgtcaatcattgcatatcttctgaagtaatt
aattctgctgcactgcaatctcctcagcaaccccagagtctatcattccttgcgatcgat
atatatgcgaaacttgttttttcaatcttcaagaatttccctgagcacgaatctagcagc
aagtactttctgctgacgaagattctggctgttactgtgagatctatccaaaaagatgcg
gaggagaagaagacatcttttaatccaagaccttatttcagactgttcatcaactggctt
ctggacctttgttcattggaccttgcagctaatggttcaagctttcagattctcacggct
tttgcaaacgcatttcatgctttgcaaccttttaaagttcctgcgttcagccttgcttgg
ctagagctggtcagccacagaagcttcatgcccaaactactcaacttaaacaatcagaag
ggttggtcatatgttcaaaacctgcttgtggacctactccagtttcttgagccgtttttg
agaaatgctgaactaggaggaccggttcatgttttgtacaagggaacgctgagagtgttg
ctggtgctgcttcatgacttcccagagttcctctgtgaatatcattttagtttctgtgat
gtgattccctcaagttgtatacaactccgcaatataatactcagttcttttccgcgaaac
atgaggctcccagatccatctactccaaacttaaagattgatttgttgcctgagatagct
gattctccccgtattctttctgaggttgatgctgctcttaaagcaaagcaaatgaagaat
gaagtggatgagtatattatgatgaggcagcagaactctcctttcctaaatgaactgaag
cagggagtgcttctcccaacaagcgaagctagtttggctggtactcgttacaacgtacca
ttgattaactcgcttgttctctatgttggaatgcaggctattcagcagctgcaggcaggt
gcttctcaggctcagtcaaatgctaatgtcgcagccttgcagatatacaagtgtttaagc
tcggaacttgatgctgaaggacgctatctgtttctaaacgcaatcgcaaaccagctccgt
tatccaaacaaccatacacactacttctctttcatcatgctctacctgtttctcgagttg
gaccaggaaatcatacaggagcaaataacaagagtgttactagagcggctaattgtaaac
cggcctcatccatggggactgcttatcacattcatcgagctcatcaggaaccgaaggtac
aacttctggaaacaagggttcataaggtgtgcaccagagatagagaaactgtttcattcg
gtggccagatcctgtgggggaggcggaggcctgaagccagtcgacgaaggtatggtctcc
gggtgggtgtctgacaacgctcctgtgtcacatatataa
DBGET
integrated database retrieval system
