Tarenaya hassleriana (spider flower): 104802144
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Entry
104802144 CDS
T04125
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104802144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
thj03041
]
104802144
03009 Ribosome biogenesis [BR:
thj03009
]
104802144
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104802144
Spliceosome [BR:
thj03041
]
Complex A
U2 snRNP components
U2 related factors
104802144
Complex B
104802144
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104802144
Ribosome biogenesis [BR:
thj03009
]
Eukaryotic type
90S particles
Helicases
104802144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_30
T2SSE
AAA_7
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
104802144
NCBI-ProteinID:
XP_010523914
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVMDDPSLSAKMAKPNGFGAAAANIGDGLINKWTGKPYTQRYFDILEK
RRTLPVWQQKEEFFRTLNANQTLILVGETGSGKTTQIPQFVLDAVEAENSDKRRKWMVGC
TQPRRVAAMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSSRTLLKYLTDGMLLREAMADPL
LERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLM
KVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPLGDILVFLTGEEEIEDACRKINK
EVNNLGDQVGPVKVVPLYSTLPPAMQQKIFDAAPAPLTEGGPPGRKIVVSTNIAETSLTI
DGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTRPGKCFRLYTEKSF
HNDLQAQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNLTKIGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNSEDPNWCYENFVNQRAMKSADNVRQQLVRIMSR
FNLKMCSSDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSTCLDHK
AEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPNCEAKRVLEKLYRKRERE
KEESKTGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagtctattcgatgtgatggacgatccctctcta
tcggcgaagatggccaaacccaacggttttggagctgcggcggcgaacatcggagacggc
ctgatcaacaaatggacagggaagccttatacgcagaggtacttcgatatactggagaag
aggaggactctgcctgtttggcagcagaaagaggagttttttcggacattgaatgccaat
cagacgctgatactggtcggtgagactggtagcggtaaaactacacagatccctcagttt
gttttagatgctgtggaagctgaaaactcggataagcgtaggaaatggatggtcggctgc
acacaacctcgcagagtggctgcaatgtctgtgtcaaggcgtgttgctgaggagatggat
gtaagtatcggtgaagaagtaggttacagcattcgtttcgaggactgcagtagctcccgg
actttgttgaagtatttgacagatggtatgcttctcagagaagccatggcagacccgctt
ctcgagaggtacaaggtaattattcttgatgaagctcatgaaagaactctggctactgat
gtgctgtttggtcttctgaaagaagtcctgaaaaacagacccgaccttaagttagttgtt
atgagtgcaaccctcgaagccgaaaagtttcaggactattttagtggagcacctcttatg
aaagttcctgggcggctccatcctgtggagatcttctacactcaggatcctgaaagggac
tatcttgaggctgctattaggactgttgtccagatacacatgtgtgagccactcggagat
attcttgtcttcttaaccggagaagaggagatagaagatgcatgccgcaaaattaataaa
gaggtcaataatctcggggaccaagtggggcctgtcaaagtcgtacctttgtactctaca
cttcctcctgcaatgcaacagaagatatttgacgctgctccagcaccactaactgaaggt
ggccctcctgggagaaagattgttgtctcgaccaacattgcagaaacatctctaaccata
gatggtatcgtgtatgtgattgatcccgggttcgctaagcagaaagtctacaatccacga
attcgtgttgagtccttgttggtgtccccgatatccaaggcaagtgctcaccagagagca
ggtcgtgctggtagaactaggcctggaaaatgtttcagactttacacagaaaaaagtttc
cataatgacctgcaagcacagacatatcctgagatattgagatcgaaccttgccaacaca
gtcctgaccttgaaaaaactgggtatagatgacttggtgcattttgattttatggaccct
cctgctcctgagacactgatgcgtgctttggaggttttgaattatttgggagcattggat
gatgaaggtaacttgaccaagataggtgagataatgagtgaatttcccttggatccgcaa
atggcaaagatgctcatagtcagtcctgaattcaactgctctaatgagattctctcagtt
tctgctatgttatcagtaccgaattgctttgtccggcctagagaggctcagaaagctgca
gatgaagctaaagctaggtttggacacattgacggtgatcaccttacgctgttaaacgtg
taccatgcttataagcaaaacagtgaagacccgaactggtgttacgaaaactttgtcaac
caaagagcaatgaagtctgctgacaatgttagacagcagctagtcagaataatgtctaga
tttaatctgaagatgtgcagctccgattttaacagccgggattactatatcaacataaga
aaggccatgcttgctggttatttcatgcaggtggctcaccttgaacggactggccattac
ttgaccgtcaaagataaccaggtggttcatttgcatccatcaacttgccttgatcataag
gcagagtgggtgatttacaatgaatatgtcttgacgagccggaatttcatccgtactgtc
acagatatccgtggtgaatggttggtcgatattgcacctcattactacgatctttcaaat
ttcccgaactgcgaggcaaaacgtgttcttgagaagctctataggaagagagaaagggag
aaggaagaaagcaagactggaagatga
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integrated database retrieval system
