KEGG   Tarenaya hassleriana (spider flower): 104804129
Entry
104804129         CDS       T04125                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
thj  Tarenaya hassleriana (spider flower)
Pathway
thj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:thj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104804129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:thj03041]
    104804129
Spliceosome [BR:thj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104804129
 Complex C
   U5 SnRNP specific factors
    104804129
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_RIG_1st Nbas_N
Other DBs
NCBI-GeneID: 104804129
NCBI-ProteinID: XP_010526614
LinkDB
Position
Unknown
AA seq 340 aa
MEIVARENENALSGPKPMEWSTVPYSTPQAPGKQRTSSLEAPIMLLTGHQSAVYTMKFNP
AGTVIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTTDGSQIVSASPDKTVRAW
DVETGKQIKKMAEHSSFVNSCCPSRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQI
TAVSFSDASDKIFTGGIDNNVKVWDLRKGEVYMTLDGHQDTITGMSLSPDGSYLLTNGMD
CKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVHIWDTTS
RRILYKLPGHTGSVNESVFHPHEPIIGSCSSDKQIYLGEI
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggagattgttgcgagagagaatgagaatgctttgtcaggtccaaaaccgatggaatgg
tctactgtcccatacagtactccccaagcacctggcaagcagcggacatcgagcttggaa
gcaccaattatgttgcttactggacatcagagtgctgtatacaccatgaaatttaaccca
gctggaactgtaatcgcctccggatcacatgatagagaaatctttctctggagagttcat
ggggactgcaaaaacttcatggtcttgaagggtcacaagaacgctatccttgatcttcac
tggaccacggatgggtctcagattgtatcagcaagccccgataaaactgtaagggcatgg
gacgttgaaaccgggaaacaaatcaagaagatggctgaacactcgtcctttgtgaattct
tgctgtccttcccgtagagggccgcctcttatagtcagtggttccgatgatggaactgcc
aagctttgggacatgcgtcagagaggtgcaatacaaacattcccggataaataccaaatc
acggcagtatctttttccgatgcatcggacaagatcttcaccggtggtatagacaataac
gtcaaagtctgggacttgcggaaaggcgaagtgtacatgacacttgatggccatcaagat
acaataacagggatgagcctaagtcccgacggatcataccttctcaccaacggcatggac
tgcaagctctgcatatgggacatgcgtccatacgccccacaaaaccggtgcgtgaaggta
ttggaagggcaccagcacaatttcgagaagaacctgctgaaatgtggatggtcacccgac
ggtagcaaagtcacggccggtagcgcggaccgcatggttcacatatgggacacgacgtcg
aggcgcattctgtacaagctccctggccacaccggctcggtcaacgagtcggtcttccat
ccacatgaacccatcatcggatcttgcagcagcgataaacagatctatctgggagagatc
tga

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