Tarenaya hassleriana (spider flower): 104804281
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Entry
104804281 CDS
T04125
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03020
RNA polymerase
thj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104804281
09124 Replication and repair
03420 Nucleotide excision repair
104804281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thj03021
]
104804281
03400 DNA repair and recombination proteins [BR:
thj03400
]
104804281
Enzymes [BR:
thj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104804281
Transcription machinery [BR:
thj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104804281
DNA repair and recombination proteins [BR:
thj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104804281
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
104804281
NCBI-ProteinID:
XP_010526823
LinkDB
All DBs
Position
Unknown
AA seq
1836 aa
AA seq
DB search
MDTRFPFSPAEVAKVRVVQFGIVSPDEIRQMSVVHIEHSETTEKGKPKIGGLSDPRLGTI
DRKVKCETCMANMAECSGHFGHLELAKPMFHVGFLKIVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVHNQDTDEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKYAR
PDWMILQVLPIPPPPVRPSVMMDATARSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIIS
EFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKAGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRFSAWHSDQETGFITPGDTQVRIERGELLAGTLCKKTLGTSTGSLVHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFTIGIGDTIADSATMEKINETISNAKNAVKDLIRQFQEKKL
DPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKFEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLEADRFQ
LGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLSVVP
GDDPLSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLG
PEPSKTKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDLDFVRSYYEMPDEDV
SPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEQDGFKT
SEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDC
LRGVTENIMLGQLAPIGTGDCELYLNDAMLKNAIELQLPSYMDGLEFGMTPARSPVSGTP
YHEGMMSPSYMLSPNFRLSPISDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPT
SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPTYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPASPSYSPTSPSYGNTSPSYNPQSAKYSPSLAYSP
SNARLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYS
PTLPGYSPSSTGQYTPHEGEKEDKTQKDRQAGKDDK
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggatactcggtttccgttttctccggcggaggtggccaaagtccgggtggttcagttt
ggcatagtcagcccggatgaaatcagacaaatgtcggttgtacatattgagcatagtgag
actaccgagaagggaaaaccgaagattggaggactgagtgatcctcggcttggtaccatt
gatcggaaggtgaagtgtgagacgtgtatggctaacatggctgagtgctcggggcacttt
ggccatctcgagctcgccaagccgatgtttcatgtcggtttcttgaagatcgtgttgagt
atcatgcgatgcgtttgcttcaattgctccaaaattttagctgacgaggaggaccataaa
tttaagcaggctttgaagataaagaatcccaaaaacaggcttaagaagattttagatgcc
tgcaaaaacaagaccaaatgtgaaggtggtgatgaaattgatgtccacaaccaagacaca
gacgaaccagttaaaaaaagccgtggtgggtgtggtgctcagcagccaaagctgactatt
gaaggtatgaaaatgattgctgagtataaagctcaaaggaagaagaatgatgatcaggac
cagcttcctgagccagcagaaaggaaacagacacttggtgctgatagggttttgagtgtt
ttaaagaggattagtgacgaggattgccagctcttagggtttaaccctaagtatgctcgt
cctgactggatgattctacaagtccttcctattcctccgcctcctgtgaggccctctgtg
atgatggatgccactgccaggagtgaggatgatttgactcatcagttagcgatgattatt
cggcacaacgaaaacttgaaaaaacaagaaaaaaatggggcaccggcacatattatatca
gagttcacacaactcttgcagtttcatattgcaacatattttgataacgagttgcctgga
cagccaagggctactcaaaaatcagggaggcccatcaaatcaatttgcagtaggcttaag
gcaaaggaaggcaggatcaggggaaacttgatggggaagcgtgtcgatttctctgcacga
actgttatcacaccagatcctacaattaatattgatgaacttggtgtaccatggagtatc
gctctgaatcttacttacccagaaacagttaccccatataacattgaaaggctgaaggag
ctcgttgaatatgggccacatcctcctcctggaaaggccggtgccaaatatatcataaga
gatgatgggcaaaggctagatcttcggtaccttaaaaagagcagtgatcaccatttggaa
cttggatataaagtggagcgacatttgcaggatggtgattttgttcttttcaatcgtcag
ccgagtctgcacaaaatgtccattatgggccacagaattaggattatgccgtactccaca
tttcgcctgaatttgtctgtcacctctccgtacaatgctgattttgatggtgatgaaatg
aacatgcatgtcccacagtcgtttgagactagagcagaagtgttggagctgatgatggtt
cctaaatgtatcgtttctcctcagtcgaataggcctgtgatgggtattgtgcaggatacg
cttctagggtgccgtaaaatcactaagagggacaccttcatcgagaaggacgtgttcatg
aacatacttatgtggtgggaagacttcgacggaaaagttccagctcctgcaattttgaaa
ccgcgtcctctttggactggcaaacaagttttcaatcttataataccaaaacagataaat
ttgttgcgattttctgcgtggcactcggatcaagagactggattcataactccaggggat
actcaagtgcggattgaaagaggcgagcttcttgctgggactctttgcaaaaagacgctt
gggacgtctactggaagtcttgttcatgtcatttgggaagaggttggtccagatgcagct
agaaagttcttgggtcatactcagtggcttgtcaattactggcttttgcaaaatggtttt
actatcgggattggtgacacgattgctgactcagcaactatggagaaaattaacgaaact
atttctaacgcaaagaatgctgtgaaagatcttatccggcagttccaggaaaagaaatta
gaccctgaaccaggacgaacaatgacggagacttttgaaaacagggttaaccaggtgttg
aataaagctcgtgatgatgctggaagcagtgctcagaagagtttggcagagaccaacaat
cttaaggccatggttacagcaggatccaaaggaagtttcattaatatttctcaaatgaca
gcatgtgtcggccagcagaatgtggaagggaagcggatcccatttggttttatagggcgg
acattgccccatttcaccaaagatgattatggtcctgaaagtcgaggatttgtcgagaac
tcgtacctgcgaggattgacccctcaagagttctttttccatgcgatgggaggaagggaa
ggtcttattgatactgctgtgaagacctctgaaactgggtatatccagaggcgattggtt
aaggctatggaggatattatggttaagtatgacggtacagtcaggaactccttgggtgat
gttattcaatttctctatggggaagatggtatggatgctgtgtggattgagtcacagaag
ctagattccctgaaaatgaaaaagtttgagttcgataggactttcaagtacgagatcgat
gatgaaaactggaacccaacttacctaagtgatgagcatctcgaagatctgaaagggatc
cgggagttgcgtgatgtttttgatgcggaatatcagaaacttgaagctgacaggtttcaa
ctcgggacagaaattgcaacgaatggtgatagtacttggccattgcccgttaacatcaag
agacatatctggaatgcacagaagaccttcaagattgacttgaggaagatttcagacatg
catccggttgaaatagtcgatgccgtcgataaactgcaggagaggctgtcggttgtcccg
ggagatgatccattgagtgtggaagcacagaagaacgctactctatttttcaacattcta
cttcgtagtactcttgcgagtaaacgggttttggaggaatacaagctcagccgtgaggct
ttcgaatgggttatcggtgagatcgaatcaagatttctacaatcgttagttgcgcccggg
gaaatgattggttgtgttgctgctcaatcaatcggagaacctgccactcagatgactctg
aatacattccactatgctggtgtgagtgccaagaacgttacccttggtgttcccaggttg
agggagattattaatgtagctaaaaggattaaaacaccttctctatctgtctacctcggg
cctgaacctagtaagacaaaagaaggggctaaaaccgttcaatgtgctttggaatatact
actctcaggagtgtcactcaagctacggaagtttggtatgacccggatccaatgagtaca
attatagaagaggaccttgactttgtcaggtcctactatgagatgcctgacgaagatgtt
tctccggacaagatatctccatggctgctgcgtattgagttgaatcgtgagatgatggtt
gataagaagttgagtatggccgatatcgccgagaagatcaatcttgaatttgacgatgac
ctgacttgtattttcaatgatgacaatgctcaaaaactcatcctacggatccgcatcatg
aatgatgaggctccgaagggggagctgcaagatgaatcggctgaagatgacgttttcctc
aaaaagattgagagcaacatgcttactgaaatggctctcagaggcattccagacattaac
aaggttttcattaaacaggtcagaaagagccggtttgatgagcaagatggattcaagacg
tcagaggagtggatgttagatacagaaggtgttaatctcttagctgttatgtgccacgaa
gatgtggatccgaagaggacgacgagcaatcacttgattgaaatcatcgaagttcttgga
atcgaggcagttcgtcgagctttgttggatgaactgcgtgttgtgatatcctttgatgga
tcttatgtgaactaccgccatctcgccatcttgtgtgataccatgacttatcgtggccat
ctaatggcaatcactcgacatggtatcaatcgaaatgacactgggccactgatgagatgc
tctttcgaagaaacagtggatattcttttggatgctgccgcctatgctgagacagattgc
ttacggggtgttaccgaaaatataatgctgggccaacttgccccgatcgggactggggat
tgtgaactgtatttgaacgatgcgatgctgaagaatgcaatcgaactgcaactccccagt
tatatggatggtctggagtttgggatgacgcctgctcgttcaccagtgtcgggaactcct
taccatgagggaatgatgtctccgagctacatgctgagtcctaattttcgtttgtcgcca
atctcagatgctcagttctctccttacgttggtggaatggccttttcgccctcttcatct
cctggctatagcccgtcatcacctggatatagcccgacctcccctggttatagccctact
tcacctggatacagcccgacgtctccaggatacagtcccacttcgcctacttacagtccg
agttctcccggctatagtccaacaagcccggcttattctcctacgagtccatcttattct
cccacctctccaagttacagccctacatctccaagctacagtccgacatccccgagctac
agcccgacatccccgagctacagcccgacttccccgagttacagcccgacttctcccact
tacagtccgacttctcctgcttatagcccgacttcacctgcatacagtcccacctctccc
tcttacagcccaacctcaccctcttacagcccgacatccccttcttacagccctacttcg
ccttcatacagtcccacatcgccgtcttacagccctacttcacctgcatatagccctaca
tctcctggctacagcccggcttcaccaagttacagtccaacatcgccgagttatggtaat
acttcaccgagctacaacccgcagtcggctaaatacagtccatctctagcgtactctccc
agtaacgcgaggttgtcgccatccagtccttacagtcctacatcaccaaactatagccca
acatctccatcatattcaccgacatctccatcttattctccttcaagcccgacttacagc
cctagcagtccatacagctcgggggcgagccctgactacagcccaagtgccggatactcg
ccaacgcttccggggtactcgccatcgtcgactggtcagtacacaccacatgagggtgag
aaagaggacaagactcagaaagacagacaggctggtaaggatgataaataa
DBGET
integrated database retrieval system
