Tarenaya hassleriana (spider flower): 104805053
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Entry
104805053 CDS
T04125
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104805053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104805053
03012 Translation factors [BR:
thj03012
]
104805053
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104805053
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104805053
Translation factors [BR:
thj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104805053
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
NPHP3_N
ATPase
nSTAND3
AAA_19
NACHT
AAA_11
ABC_tran
ATPase_2
Dicer_dimer
ResIII
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104805053
NCBI-ProteinID:
XP_010527764
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MLSSLLLFSPSPPPPKTLKPSPVSAPMKDPPPSSVYVPPHHRLRSVVTVPSAVFPSMSPP
RLYRSDEDRDSGAFPCANIDEWKRKFSTLLCDAQTQEVISREKKDRRDFDKLAALATRMG
LYSRSYAKVVVFSKVPLPNYRFDLDDKRPQREVNVHMGLVRSVEAYLREYFNKKSNGMDR
FPDNSFSRTSSTVSLATDEGLLEQPEPLPASKTMMDKVLWRRSSQLRDRQQSWQESSEGR
RILKFRRSLPAFKDRDSILAAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAVCS
IICTQPRRISAMSVSERVAYERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRKLLV
DRNLKGISYVIVDEIHERGMNEDFLLIILRDLLPRRPEIKLILMSATLDAELFSSYFGGA
RVIHIPGFMYPVRSHYLEDVLEMTGYRLTPYNQIDDYGQERMWKMSKQTPRRRKSQIASV
VEDALRAANFKEFRPETRESLSAWNPDCMGFNLIEFLLCHICENERPGGILVFMTGWDDI
SSLKEKLQTHPILSNPNLVLLLACHGSMASSEQSLIFEEPASGVRKIVLATNIAETSITI
NDIAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQSGECYHLYPKCVY
DAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPELLAVQNAIEYLKIIGAL
DENENLTTLGHYLSKLPMEPKLGKMLILGAFLGCLDSVLTIAAGLSVRDPFLTPLDKKDL
AEVAKSHFSRDYSDHLALVRAYEGWKDAEKDFAGYDYCWKNFLSLQSMRAIDCLRKEFFS
LLKDSGLLDGNTSTCNLWGKDENLIRAVVCYGLYPGICSVVHSERSFSLKTMEDGQVLLY
SNSVNAREPKIPYPWLVFNEKIKVNSVFLRDSTAVPDSVLLLFGGCISKGDSDGHLKMLG
GYLEFFMKPAVAEIYLSLKKELDELIQSKLLNPRMDMQAHCDLVSALRLLICEDQCDGRF
VFGHQVVRPLRTPVTPTQPSLVSRTESGPGGDNSKSQLQTLLTRAGYTAPIYKTKQLKNN
QFQAAVEFNGMQIMGQPCTNKKSAEKDAAAEALQWLMGGAQQGQEHIDYVSTLLKKSKKD
HN
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgctctcttctcttctcctcttctctccttctcctcctcccccaaaaaccctaaaaccc
tccccagtctctgctccgatgaaggatcctcctccttcctccgtctacgtccctcctcac
caccgccttcgctccgtcgtcaccgttccttctgccgtctttccttccatgtctccgcca
cgcctctaccgctctgacgaagatcgcgactcgggtgcatttccttgtgccaacatcgat
gagtggaaaagaaagttctctacgcttttgtgtgatgcccagacacaagaggtgatctct
agggagaagaaggatcgaagggatttcgacaaacttgctgcattggctaccagaatggga
ttgtatagtcgttcatatgccaaggttgttgtgttcagtaaggtcccactccccaattat
aggttcgatctggatgataagaggccgcagagggaggtgaacgtacacatgggccttgtt
agaagtgttgaagcgtacctcagggaatacttcaataaaaaatcaaacgggatggacaga
ttccctgacaattccttctcaagaactagtagcaccgtgagtcttgctactgatgaaggg
cttcttgagcaacctgagcccctgccggccagcaagacaatgatggacaaggttctttgg
cgaaggagttcgcagcttcgagatcgacaacaatcctggcaggaatcctcagaaggcagg
agaatattaaaatttcgcagaagtcttcccgctttcaaggacagggattcaatattggca
gcgatttcacaaaatcaggtgattgtaatctctggtgaaactggttgtggcaagactaca
caaattcctcaatttattttagaatccgaaattgaagcaaaccgtggagctgtttgcagt
atcatttgtacgcagccaaggagaatatcagcgatgtccgtctcggagagggttgcttat
gagagaggagagaagttgggcgaatctgtgggatacaaagtacgattggaaggcatgaaa
ggaagagatactcgcctactcttttgcaccacaggcattttgttgagaaagttgttggta
gatagaaacttgaaaggcattagttatgttattgttgatgaaattcacgagcggggaatg
aatgaagattttctgcttatcattcttagagatctccttcctcgtcggccagagatcaag
ttgattctgatgagtgcaactttagacgcagagcttttctcatcttactttggcggggca
cgagtaatccacattccaggatttatgtatcctgtccgtagccattacctggaagatgtt
ctagagatgactgggtacagattgactccgtacaatcaaattgatgattatggtcaagaa
agaatgtggaagatgagcaaacagacgccaagaagacggaagagccaaattgcttctgtt
gtcgaggacgcactgagagcggccaacttcaaggagtttagacctgagactcgagagtct
ttatccgcttggaatccggactgtatgggctttaatctcatagagttccttctctgccat
atatgtgagaatgagaggcctggtggtattctagtttttatgactgggtgggatgacatc
agctctctgaaagaaaagcttcagactcatccgatcttgagcaatccaaatctggttttg
ttgcttgcctgccatggttctatggcaagttctgagcagagcttaatatttgaagaacct
gcaagtggagtaagaaaaatagtgttagctactaatatcgcggagacgagcatcacaatt
aatgatattgcttttgttattgactgcggaaaggcaaaagagacatcctacgatgcatta
aataacactccctgtttgcttccttcgtggatttctaaagtttcagcccagcagagaaga
ggaagagctggacgtgtacaatctggagagtgttatcatctttacccgaagtgtgtatat
gatgcttttgctgaatatcagttgcctgaaattttgaggacgcccttgcagtccctgtgt
ctgcaaataaaaagtttaaatcttggaagcatatctgagttcttatccagggcactgcaa
tctccagaactgctagcggttcaaaatgctatcgaatatttgaagattatcggtgcgtta
gatgagaatgaaaatctcactactctaggtcattatttgtccaaacttcccatggagcca
aagcttggaaaaatgctcatattaggggcttttcttggttgccttgattcagttttgact
attgctgctggtctgagtgtgagagatcctttcttgacacctttggataagaaggatctg
gcagaagttgcgaaatcccatttttcacgtgattacagcgatcatcttgcacttgttcgg
gcatatgaagggtggaaagatgctgagaaggacttcgcgggttatgattattgttggaaa
aattttctctcattacaatctatgagggctatcgattgtcttcgaaaagagttcttctca
ttgctcaaggatagtggactcctggatggaaacacatcaacctgtaatttgtggggcaag
gatgaaaatcttatccgagcagttgtttgctatggattgtatccaggcatctgctcggtt
gtgcatagtgagaggtcattttctctgaagaccatggaggatggccaagtgcttctgtat
tcaaattccgtaaatgcccgggagccaaaaataccttatccatggttggttttcaatgag
aagattaaagtaaattcagttttcctgagggattcgacagctgtacctgattctgtgctt
ctcctctttggtggctgcatctcaaaaggagacagtgatggccacctgaaaatgttggga
ggatacttggagttcttcatgaaacctgctgttgcagaaatatacttgagcttgaagaaa
gagcttgatgagcttatacagagcaaattgttgaatcctagaatggacatgcaagcacac
tgtgatctggtatcagcgttacggttgttgatatgcgaggatcaatgtgatggaagattt
gtctttggtcaccaagtagtcaggcctttgagaacacccgtaactccaacacaaccgtcg
ttggtttcgaggactgaaagtggtcctgggggtgataattccaagagccagctccaaact
ctacttactagggcaggctatacagcacctatatataaaactaaacagttaaagaacaac
cagttccaagcagctgtggagtttaatgggatgcaaatcatggggcaaccttgcaccaac
aaaaagagtgctgaaaaagatgctgcagccgaagctctgcaatggctcatgggtggtgct
caacaaggccaggaacacatcgattacgtgtcaacattattgaagaaaagcaagaaggac
cacaattaa
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