Tarenaya hassleriana (spider flower): 104805097
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Entry
104805097 CDS
T04125
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104805097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thj03021
]
104805097
03019 Messenger RNA biogenesis [BR:
thj03019
]
104805097
Transcription machinery [BR:
thj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104805097
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104805097
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
104805097
NCBI-ProteinID:
XP_010527823
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MENSRRPFDRSRDPGPMKKQRIAEEPIRPSNPNARQVPTQRPLGSVSVTPVARLRAGGRA
DSGDPSREAYQPQPVNPHHELVSQYKSALAELIFNSKPIITNLTIIAGENLHAAKAIVST
IFNNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEIFIKAYRQVDPPTHSSMRH
LFGTWKGVFHPQTLQIIEKELGFNSRHESSPSVVTTTRADPSSQRPSHSIHVNPKYLERQ
HLQQSSRAKGMVTDVPGIISNSNGDSDRLERASSLAAGGTWVDPSVKANSIRRPPRESLS
EPLYEKDITSIPGEYDYASDLPQHSRSGNKKIGSRITDEGHGRQWYGSMSSFPEMISGQR
DGLNTKGRISTYSAARLSNPDPSGPGRSSIGVSSSWKNSEEDEFMWDMHSRLTETDVTSI
NLRNEPWTTDESERLESENHLLRSTRLPDVGTRFESENSTDSYSSEQKDRLAYGRLISSP
RSSQDSLVQHNSEGYSSMVGGTSTLTRKGVRPQAVSSRVRAPGSGILPHSASESDRQSPV
HDSASLQTLTKQDVRRINSLPQRDPRTSRLPVKPERSQSSGSVSRPVASDAPGQSDVSNL
LAAVMKSGILSKNPTGGGLKEESFQDEENPRLQSLSAASRPRTVPPSLPNSVANENSSTR
LKVGKPSPLPGSCPTANKTSDENSSKASDPISSLLSSLVSKGLISASKTELSSLSQSQVA
SATEDHSPDHSTNSSISVTAVPSDNKPEASVNRGPSTAPKAKGPDPPSETARLESDDLIG
LQFRPDKIREFHPAVIGSLFDDGIRLKHKEQLLMHSGKHDEKSKSKKSWAWFPKADDWVA
GKPSQLEPDLPIVQREPEAMKEDGPAVLADENQCACILCGEMFHDHFSPEMDRWMFKGAV
YLPIASAGIEAKATIVHTNCLTENSKEELGIVDEMKKENDG
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgaagaccgtttgatagatccagagatcccggtccgatgaagaaacag
cgcatagccgaggaaccaattcggccttcgaatccgaacgcgcggcaggttccgacacag
agacctctcggctcagtgtccgtaacaccggttgcgagattacgagccggaggcagagcg
gatagcggtgacccgagccgtgaggcgtatcagccacagccagtgaatccgcaccatgag
ctcgtgagccagtacaagtcggcactggcggagcttattttcaattcgaagcccataata
acgaacctgacgataatcgcaggagagaatcttcatgcggcgaaggccatcgtatccaca
attttcaacaacatcctcgaggtaccaagtgatcaaaaactaccatcattgtacctgtta
gatagcattgtgaagaatatcggaagggattatattaaatactttgctgcaaggctgcct
gagatattcattaaggcatacagacaagttgatcctcctacacattcaagtatgcgtcat
ctttttggaacgtggaaaggagtctttcatccacagacacttcaaattatcgagaaagaa
cttggctttaattccagacatgagagttcgccatctgttgttaccacaactagagctgat
ccatcatctcagcgcccatctcatagcattcatgtgaatcccaagtatctggaacggcag
cacctacaacaatcgagcagggcaaaaggaatggttactgatgttcctggtatcatatct
aactcgaatggggattcagatagactggagagagcttcaagcttagcagctggaggtaca
tgggtagatccatctgttaaagcaaatagcattcggagacctccaagagagtcacttagc
gaacctctttatgagaaagatatcacctcgatacccggtgaatatgattacgcttctgat
ctaccgcagcattctagatcaggaaataaaaaaattggttcgaggattacagatgaagga
catggcaggcaatggtatggatctatgagcagttttcctgagatgatttccggccagagg
gatgggttaaataccaaaggcagaatttccacctacagtgctgccagattgtctaatcca
gatccaagtggtcccggtagaagtagtatcggtgtctctagtagttggaaaaattctgaa
gaagatgaatttatgtgggacatgcactcaagactaactgaaactgatgtaaccagcatc
aacttgaggaatgagccttggacaacagatgaatcggagagattggagtctgaaaatcac
ctattgagatctactagactaccagacgtggggacaaggtttgagtctgagaattcaact
gattcatattcaagtgagcaaaaagatcgacttgcatatggtcgcttgatatcttctcca
aggtcgtcgcaagatagtcttgttcagcataattcagaaggttattcttctatggttggt
gggacctctactctaacaagaaaaggggttcggcctcaagctgtttcatctcgtgttaga
gccccaggctccggtattttgccacactcagcatctgaatcagatagacaatcacccgta
catgattcagcttcgctacagactttgacgaagcaagatgttagaagaattaattccctt
cctcaacgtgatcctaggacttcccggcttccagtgaaacctgagcgatcccagtcttca
ggtagtgtttcacgtcctgttgcttcggatgctccaggccaatcagacgtgagcaatttg
ctggctgctgtcatgaagagtggaatcctttctaaaaacccgactggtggtggattgaag
gaggagagctttcaagatgaggagaatccaagattgcaatccctctccgcagcctctaga
cctaggacagtcccaccatcattgccaaactcagtggccaatgagaattcatctactcgt
ttaaaagttggaaagccatcgccattgcctggttcttgcccaacggcaaataagacttct
gatgagaatagtagtaaggcctcagatcctatatcaagcctcttgagctccttagtttca
aagggtttgatatcggcttcgaagacagagttgtcatccctttcacagagccaggttgct
tctgcaacagaggaccatagtccagatcattctaccaatagctctatatctgtaaccgcg
gttccatcggataataagccagaggcttcagtgaacaggggcccatccacagcccctaaa
gcaaaagggcctgatccgccatctgaaacagcaagactggagtcagacgacctcatagga
ctgcagtttaggccggacaaaatccgggaatttcaccctgcggtgatcggtagtctgttt
gatgatggcattcgcctaaaacacaaggaacaacttttaatgcactcgggaaagcatgat
gagaagagcaagagcaaaaagtcatgggcttggtttccaaaagctgatgactgggtggca
ggaaaacctagccagcttgaacccgatctccctatcgttcagagggagcccgaggcaatg
aaggaagatggtccagctgtcctggcagacgagaaccagtgtgcatgcatcttgtgtgga
gagatgttccatgaccatttcagtccagaaatggatcgatggatgttcaagggggcggtt
tacttgcccattgcctcagccggtatcgaggccaaggccacaatagtccatacaaattgc
ttgactgagaactcaaaggaggaattgggcattgtggatgagatgaaaaaggaaaatgac
ggttag
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