Tarenaya hassleriana (spider flower): 104808814
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Entry
104808814 CDS
T04125
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104808814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104808814
Enzymes [BR:
thj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104808814
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104808814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104808814
NCBI-ProteinID:
XP_010532929
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MQRRFLSSFPAGAGGGKTLNHRRWCAKQVKKSNFQDTIDEVRTCIDSSDFVAVSLQNTGS
YAAAWHRVSALDTPETAYMKAKYAAERYQIFQFALCPFTIRGSRLTVQPYNFHLFPRDEL
KLGMPSYSFSCQASRLTAMAREGFDFNTCIYEGISYLSRAQESASKFISGNPVLADPVTE
PFSPSTVADTVFVGRVRSRVTSWKQTCTDSSSKIDEPLVKSLRRLVLGGEEHGSRPCLTI
DVCSERQVQLILEMLAEFSDDIVPLLIPGKGRGTQAVRAVLTSSEEDKELFKKELRDLES
EQNRRVRGFREVVELISTSRKPVVSQNSLNDFTFIHAKFLAPLPSNVDEFNSSLSSAFPN
IVDLSQLMKEISPLRNITNVSAAMSCMNRFYAPVDVEVANQGSPVKLAEDHQIHGQNSLM
ISLLFAKLCMVLKAEPATIQSSDNFQAFGSDEYANTIDPCSGNPSDENVRIWSRNSRRVK
SENLVFLWGLGKKMSAAVLKNVLQKLHPVFAEEFDVKFIDKSCAIVVFWNPGFSETFLNA
VTNGEQLSDTLKEMVAEGLRATGYDTFKRACRLGFWESDLADALDKALESADAEADSETE
ASEIDRTRELMINFDEL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcggtttctttcgtccttccccgccggcgccggcggaggcaaaaccctaaat
caccggagatggtgtgctaagcaggtgaagaaatctaacttccaagataccattgatgaa
gttcgtacttgcatcgattcgtcggacttcgtcgccgtctcgctgcagaacaccggttcg
tacgccgccgcatggcaccgtgtctccgccttggacacgcccgagacagcttacatgaag
gcaaagtacgccgccgagcgctaccagattttccagttcgcgctctgtcctttcacgatt
cgcggttccagactcacagttcagccgtataacttccatttgtttcctcgggacgaattg
aagttagggatgccctcttacagcttctcttgtcaagcttctcgtttgacggccatggcg
agagaagggtttgatttcaacacctgcatttacgaaggaatatcatatttgtccagagca
caagagtcagcttcaaaattcatctcggggaatccggtattagcagatcctgttacagag
cctttttctccatccactgtagctgatacagttttcgtaggaagggttagatcacgtgtc
acaagttggaaacagacttgtacggattcgagctcaaagatagatgagcctttggtgaaa
tctctaaggagactggtcttgggaggtgaggagcatggttcaaggccatgtttgaccatt
gacgtctgcagtgagcgtcaagtgcaacttatcctagagatgttggctgagttctctgat
gacattgtccctctactaatccctggaaagggaagaggaacgcaagcagttcgtgctgtc
cttacgagttcagaggaggacaaggaactttttaagaaggagcttcgtgatcttgaaagt
gaacaaaataggcgagttcgtggctttcgagaggtggtcgagttgatttctacttcaagg
aaacctgttgtgtcccagaattcccttaatgattttactttcattcatgccaagttccta
gctcctctaccttcaaatgtggacgagttcaatagttcactgagctcagcttttcccaac
attgtagatctcagtcagttgatgaaagaaattagtcccctgcgaaatataactaatgta
tctgcagctatgtcctgcatgaatcggttctatgcacctgtggatgtggaagtcgcaaat
caaggttctccagttaaactagctgaagaccatcagatccatgggcaaaactcattgatg
atatctctgttgtttgcaaaactatgtatggtactgaaagcagaaccagctaccatacaa
tcaagtgacaatttccaagcttttggttctgatgagtatgcaaataccattgacccatgc
agtggtaacccaagcgatgaaaatgtcagaatatggtcaaggaacagtcggagagtaaag
tctgaaaatttggtgttcttatgggggttagggaaaaagatgagtgccgcagtgctgaag
aatgtccttcagaagttacaccctgtttttgctgaagagtttgatgttaagttcatagat
aaaagctgtgcaattgtcgtattctggaatccgggtttttcagagacatttctgaacgca
gtcactaacggagagcaactcagtgataccttaaaggagatggttgcggaagggctaaga
gcaacaggttatgatactttcaaaagagcatgcagattaggcttctgggaatccgatttg
gcagatgctttggacaaagcattagaatctgctgatgctgaagcggattctgaaacagag
gcatcagagatagacaggacaagagagttgatgatcaactttgatgaactatga
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