Tarenaya hassleriana (spider flower): 104809987
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Entry
104809987 CDS
T04125
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104809987
03015 mRNA surveillance pathway
104809987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104809987
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104809987
mRNA cycle factors
P-body specific factors
104809987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
HAGH_C
Motif
Other DBs
NCBI-GeneID:
104809987
NCBI-ProteinID:
XP_010534438
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MDQPEEESKSTKQDDEEALARQEEIKKSIEAKMALRQSNLNPERPDSTFLRTLDSSIKRN
TAVIKKLKQINEEQREGLMDELRGVNLSKFVSEAVAAICEAKLRSSDIQAAVQVCSLLHQ
RYKDFSPSLTQGLLKVFFPGKSTDDLDADKHSKAMKKRSTLKLLLELYYVGVIEDGGIFI
NIIKDLTSVEHLKDRDTTQTNLTLLASFARQGRVFLGLPVSGQDEEFLKGLDITADQKKI
LRKAFNTYYDAAAETLQSEHKLLHQMEQENAKLLNAKGELSEESVSSYEKLRKSFDHLYR
NISSLAEALDMQPPVMPEDGTTRLTTVEDASSSGPPKDISVTEAIWDDEDTKTFYECLPD
LRAFVPAVLLGEVEPKANEQSAKAKDKSPESGSEAVESQLAAKETADVPVDSDHVADGSN
AEKSKDKGETSSERATDTENEKGKEKDGDKKVENEKEKVKSLDGANLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSSRKKLVRSLFNVPRTSLELLPYYSRMVATLATCMKDIPTMLVQ
MLEDEFNSLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETSIRMTNMLEILMRLKNVKNLDPRQSNLVENAYYLCKPPERSA
RIAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWTECEQYILKCFMKVHKGKYGQI
HLIASLTAGLSRYHDEFAVAVVDEVLEEIRVGLELNDYGAQQKRLAHMRFLGELYNYEHV
DSSVIFETLYVILVFGHGTPEHEVLDPPEDFFRIRMVITLLETCGHYFDRGSSKKRLDRF
LVHFQRYILSKGPLPLDVEFDLQDLFAILRPNMIRYMTIDEVNAAILELEEHDHAATEKT
SLEKKHSYAEKGPGRPSSNVISANGQSTANGATENGEAHEDMGKSDSDSSTGSMGGDGRN
EELDEGNHDRGSETDNGDDYDDGDGRATDDDDDDEFRVRQKIVTVDPEEQADFDQELKAV
LQESMEQRKQELRGRPALNMTIPMNVFEGSGKDHHLGRVGESGDQVSDEESGEQKDVQVK
VLVKRGNKQQMKQMFIPRDSSLIQSTKQKEAAELEEKQDIKRFVLEYNDRDEEEVNGLGT
QTLNWTLGGSRGSARGGGNTWEGSGRSGGSRHRYYYHQGGGGSYHTRRK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaccagaagaggaaagcaaaagtacgaagcaggatgacgaggaagctcttgcg
cgtcaagaggagattaagaaatcgattgaagccaaaatggctcttcgtcagagcaacttg
aaccctgaaaggcctgactcgacgttccttaggactctagattctagcatcaagcgaaac
acagcagtaatcaagaaattaaaacaaataaatgaagagcagcgagaagggctgatggat
gagctgcgaggtgtaaacctcagcaaattcgtcagcgaagcggttgcagctatttgtgag
gcgaagctcagaagttcagacatacaagcagctgttcaggtatgctcgttacttcatcag
aggtataaagacttttctcctagcctaacacaggggcttttgaaagtcttcttccctgga
aaatctacggatgatttagatgcagacaaacactcgaaggccatgaaaaagcgcagtaca
ttaaaactccttctggaactctattatgtgggagttatagaagatggtggtattttcatc
aatattatcaaggatcttactagtgttgaacacttgaaagacagagatactacccagacg
aatttgacgcttcttgctagttttgctcgtcaaggtagagtctttctggggcttcctgtt
tccgggcaagatgaagagtttttaaagggcctcgacatcactgcagaccagaaaaagatt
ttgaggaaagctttcaacacatattatgatgctgcagcagaaacccttcagtctgagcat
aaactacttcatcaaatggagcaagaaaatgctaaactgctgaatgctaaaggggaactt
agtgaagagagtgtatcttcttatgagaagctaaggaaatcatttgaccatctgtatcgc
aatatctcatcgttagccgaagcgcttgatatgcaaccccctgttatgccagaggatggt
acaaccaggctcaccacagtggaagatgcctcgtcttctggtccaccaaaagatatctct
gtcactgaagccatatgggatgatgaagataccaagacattctatgagtgcttgcctgat
ctgagggcatttgttccagctgttctcttgggagaagtcgagcctaaagcaaatgagcaa
tctgcaaaggcaaaagataaatcccctgagtctggatctgaagcagttgaaagtcaacta
gctgcaaaagaaacagcagatgttccagttgattctgatcacgtggctgatgggtcaaat
gctgagaagtcgaaggataagggagaaacctctagtgaaagggctacagacacagagaat
gaaaaagggaaagaaaaggatggtgacaagaaagtagaaaacgagaaggagaaagttaag
agcctcgatggtgcaaacttggatgctttgttacagagacttcctggttgcgttagccgt
gatctgatcgaccagttaacagtagagttttgctatttgaattctaagtcaagcagaaaa
aaacttgtgagatcattatttaatgtcccaaggacatctcttgagttgctaccgtactat
tcacgcatggttgcaacactggctacttgtatgaaggacatccctacaatgcttgtgcag
atgttagaggacgagttcaactctctgatcaataaaaaggatcaaatgaatattgaaaca
aaaatccggaacatcagatttattggagagctctgcaagtttaaaattgcaccagctggc
cttgtattcagttgtttgaaggcttgtttagatgattttactcatcataacatcgatgtt
gcttgtaatcttctagagacatgcggtcgtttcctttatcggtctcctgaaacctcaatc
aggatgactaacatgttggagatattgatgcgcctgaaaaatgtaaaaaacttagatcct
cgtcaaagcaaccttgtggaaaatgcttactacctttgtaaaccacctgaaaggtcagca
aggattgccaaagtccggcctccactgcatcagtatattaggaaattgctattctcagat
cttgataagtcgaccatcgagcatgtcctgaggcaacttcggaagttaccgtggactgaa
tgtgagcaatacatcttaaagtgctttatgaaggttcacaaaggaaaatatggccagatt
cacttgattgcttccttgactgctggtttgagtcgctatcatgatgagtttgcagtggct
gttgttgatgaggtcctggaggagatcagggttggacttgagttaaatgattatggggcg
caacaaaagcgattggcccatatgagattcttaggggagctgtacaactatgagcatgtg
gattcatcggtcatatttgagacgctttatgtaatccttgtattcgggcatggtactcct
gagcacgaggtgctggatccaccagaagattttttccgcatcaggatggttattaccctt
cttgaaacctgtgggcactactttgatcgaggatcttcaaagaaaaggcttgatcggttt
ttggtacatttccagagatacatactaagcaagggtcctctacccctcgatgttgaattt
gatttgcaggatctctttgcaattctgcgacccaacatgatccgatacatgaccatcgat
gaggttaatgcagctatcctggaacttgaagagcatgaccatgctgcaacggaaaaaacc
agtttagagaagaagcattcatatgcggagaagggtcctggtaggccatcttctaatgtt
atctcggctaatggacaaagcactgcaaacggtgctacagaaaatggcgaagctcatgaa
gacatgggaaaaagtgacagcgattccagtactggctccatgggtggagatggacgcaat
gaggagttagatgaagggaatcatgatcgaggatctgagaccgacaatggtgacgactac
gatgatggcgatggacgtgccactgatgatgatgatgatgatgaattccgtgtcaggcag
aagatagtcactgtggaccccgaggaacaagcagactttgaccaggaactcaaggctgtg
ttgcaggagagcatggaacaacgaaaacaggagttacgtggccgaccagcgttgaacatg
acgataccgatgaacgtttttgagggatcgggcaaggatcatcatctgggaagagttggc
gagagcggtgaccaagtgtcggatgaggagagcggagagcagaaggatgtgcaagtgaag
gttctcgtgaagcgcggaaacaaacaacagatgaaacagatgttcatcccgagggatagt
tcgctgatacagagcacgaaacagaaagaagctgcggaattggaagagaaacaagacatc
aagaggttcgtattagagtacaatgacagggacgaagaggaggttaacgggttaggaacc
cagacgttgaattggacgctcggtggaagtagaggctcggctcgaggaggaggtaacacg
tgggaagggagcggaaggagcggtggttcgcgtcatcggtattattatcaccaaggagga
ggagggtcgtaccacaccagaagaaagtga
DBGET
integrated database retrieval system
